A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: PD0298  PDB ID: 1L3L 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12EE_DA2DT3:DA18DT19_GG0.601-0.7523.1220.3641.70730.571-1.743-1.0713.0833.234-0.68930.62
18EE_DA8DG9:DC12DT13_GG0.6330.1773.3822.1620.71635.8430.18-0.7063.4161.161-3.50935.913
110EE_DA10DT11:DA10DT11_GG0.078-0.7123.0212.0161.89931.263-1.6440.2032.9733.515-3.73131.383
116EE_DA16DC17:DG4DT5_GG0.841-1.1843.3143.6922.21534.06-2.36-0.8383.3033.763-6.27234.323
118EE_DA18DT19:DA2DT3_GG-0.603-0.7243.136-2.563-2.97333.897-0.7740.6323.222-5.0774.37834.117
17EE_DC7DA8:DT13DG14_GG-0.5250.9583.169-0.655-0.90140.2831.4890.6913.156-1.3080.95140.297
112EE_DC12DT13:DA8DG9_GG-0.5830.0753.415-1.158-0.48634.5780.2050.7933.431-0.8171.94834.6
115EE_DC15DA16:DT5DG6_GG-0.464-0.6113.225-1.6866.7927.578-2.7540.573.01413.963.46728.435
117EE_DC17DA18:DT3DG4_GG-0.436-1.0273.757-2.3618.00530.543-3.5350.3123.40814.8514.3831.636
11EE_DG1DA2:DT19DC20_GG-0.5130.3322.984-6.3612.87330.1910.104-0.1863.0445.42512.01130.969
14EE_DG4DT5:DA16DC17_GG-0.724-0.8073.329-1.755-1.830.856-1.1531.0063.405-3.3763.29230.956
16EE_DG6DC7:DG14DC15_GG0.372-0.3053.0181.0684.0925.392-1.738-0.5612.9469.223-2.40825.736
19EE_DG9DA10:DT11DC12_GG-0.005-0.4513.526-0.91-1.01538.403-0.549-0.1153.536-1.5421.38338.426
114EE_DG14DC15:DG6DC7_GG-0.387-0.3072.788-1.9839.30428.512-2.2050.4032.58218.2593.89330.026
13EE_DT3DG4:DC17DA18_GG0.047-0.6363.770.9354.46835.501-1.770.0773.6667.29-1.52635.784
15EE_DT5DG6:DC15DA16_GG0.159-0.5243.103-1.2258.42231.861-2.255-0.4752.86715.0092.18332.95
111EE_DT11DC12:DG9DA10_GG-0.032-0.1963.523-1.256-2.47739.1710.026-0.1133.528-3.6891.87139.265
113EE_DT13DG14:DC7DA8_GG0.5760.9413.2221.7430.59738.2731.36-0.6613.2570.909-2.65738.315
119EE_DT19DC20:DG1DA2_GG-0.4-0.093.454-1.01-0.79742.273-0.0390.4453.463-1.1051.442.291
121FF_DA102DT103:DA118DT119_HH0.557-0.7533.15-0.7592.86327.609-2.224-1.3343.0415.9771.58427.764
127FF_DA108DG109:DC112DT113_HH0.8410.1153.4471.9752.37935.813-0.173-1.0643.4883.859-3.20535.941
129FF_DA110DT111:DA110DT111_HH-0.027-0.7653.038-0.3581.79631.716-1.701-0.0122.9913.2830.65531.768
135FF_DA116DC117:DG104DT105_HH0.652-1.0553.255-0.2890.81330.73-2.148-1.2863.2211.5340.54530.742
137FF_DA118DT119:DA102DT103_HH-0.657-0.6823.149-2.216-2.35833.877-0.7980.7783.223-4.0353.79334.026
126FF_DC107DA108:DT113DG114_HH-0.7020.8993.117-0.211-2.02839.4091.5581.0163.072-3.0050.31339.46
131FF_DC112DT113:DA108DG109_HH-0.5860.2983.416-0.6681.22735.1460.3020.8653.4352.0311.10635.173
134FF_DC115DA116:DT105DG106_HH-0.259-0.4523.2360.14911.08128.099-3.0480.5262.85521.781-0.29330.164
136FF_DC117DA118:DT103DG104_HH-0.124-1.0863.70.1798.14933.01-3.2840.2433.34414.075-0.30833.974
120FF_DG101DA102:DT119DC120_HH-0.490.1643.165-4.7274.80832.833-0.4920.0873.1948.3968.25433.5
123FF_DG104DT105:DA116DC117_HH-0.71-0.8813.428-1.945-0.64431.341-1.5010.9273.481-1.1913.59531.407
125FF_DG106DC107:DG114DC115_HH0.318-0.3452.947-0.0175.70326.828-1.983-0.6752.81412.1170.03627.417
128FF_DG109DA110:DT111DC112_HH-0.056-0.4633.494-0.568-0.73838.721-0.6010.013.502-1.1130.85638.732
133FF_DG114DC115:DG106DC107_HH-0.424-0.2982.88-1.3822.22129.231-1.010.5752.8674.392.73229.345
122FF_DT103DG104:DC117DA118_HH0.344-0.7353.5691.3391.94936.511-1.462-0.3483.5363.108-2.13536.585
124FF_DT105DG106:DC115DA116_HH0.166-0.4013.1111.7157.14830.878-1.968-0.0082.95113.191-3.16631.721
130FF_DT111DC112:DG109DA110_HH0.08-0.2843.420.389-3.14938.071-0.018-0.073.432-4.817-0.59538.198
132FF_DT113DG114:DC107DA108_HH0.430.8613.193-0.684.32238.7340.774-0.7263.2596.4911.02238.971
138FF_DT119DC120:DG101DA102_HH-0.341-0.2123.455-0.4240.24241.459-0.3260.4343.4570.3420.59941.461

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.