A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PD0334  PDB ID: 1M5R 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
112C_DA8:DT19_E120
114C_DA10:DT17_E120
116C_DA12:DT15_E120
113C_DG9:DC18_E119
117C_DG13:DC14_E119
115C_DT11:DA16_E120
11E_DA21:DT6_C120
14E_DA24:DT3_C120
12E_DG22:DC5_C119
13E_DT23:DA4_C00
15E_DT25:DA2_C120
119D_DA2:DT25_F120
121D_DA4:DT23_F120
111D_DA8:DT19_F120
19D_DA10:DT17_F120
17D_DA12:DT15_F120
122D_DC5:DG22_F119
118D_DG1:DC26_F119
110D_DG9:DC18_F119
16D_DG13:DC14_F119
120D_DT3:DA24_F120
123D_DT6:DA21_F120
18D_DT11:DA16_F120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)