1M5R: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PD0334 PDB ID: 1M5R

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	12	C_DA8:DT19_E	0.005	-0.179	0.105	6.503	-7.684	2.461
1	14	C_DA10:DT17_E	-0.077	0.076	0.168	0.59	-13.087	-0.516
1	16	C_DA12:DT15_E	0.219	-0.188	0.147	-11.083	-9.805	-2.663
1	13	C_DG9:DC18_E	-0.201	0.052	0.1	3.243	-14.31	1.827
1	17	C_DG13:DC14_E	0.238	-0.234	-0.008	-10.81	-8.509	-2.908
1	15	C_DT11:DA16_E	0.142	0.043	0.247	1.054	-10.655	-0.013
1	1	E_DA21:DT6_C	0.219	-0.124	-0.155	-8.203	-1.028	7.399
1	4	E_DA24:DT3_C	0.165	-0.09	0.319	-12.646	-16.728	8.237
1	2	E_DG22:DC5_C	-0.422	0.151	-0.045	-1.208	-3.249	1.076
1	3	E_DT23:DA4_C	0.037	0.259	0.004	-0.251	-13.328	6.468
1	5	E_DT25:DA2_C	0.268	-0.182	0.618	-14.56	-19.655	9.498
1	19	D_DA2:DT25_F	-0.023	-0.235	0.013	1.693	-18.641	-1.87
1	21	D_DA4:DT23_F	0.162	0.201	0.235	1.294	-7.493	4.19
1	11	D_DA8:DT19_F	0.483	-0.027	-0.069	1.769	-3.991	0.759
1	9	D_DA10:DT17_F	0.096	-0.099	0.274	0.98	-6.628	3.108
1	7	D_DA12:DT15_F	-0.036	-0.033	0.088	3.03	-10.355	-0.634
1	22	D_DC5:DG22_F	0.453	0.096	-0.066	5.797	-9.665	3.583
1	18	D_DG1:DC26_F	-0.665	-0.287	-0.159	-5.681	-10.945	1.784
1	10	D_DG9:DC18_F	-0.176	0.045	-0.012	1.255	-10.134	0.204
1	6	D_DG13:DC14_F	0.262	0.056	0.098	8.687	-11.121	1.769
1	20	D_DT3:DA24_F	-0.162	-0.028	-0.234	2.35	-4.026	2.919
1	23	D_DT6:DA21_F	-0.59	-0.094	0.021	4.444	-3.079	6.745
1	8	D_DT11:DA16_F	-0.07	-0.053	0.129	2.812	-10.762	4.507

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.