A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PD0334  PDB ID: 1M5R 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
112C_DA8:DT19_E0.005-0.1790.1056.503-7.6842.461
114C_DA10:DT17_E-0.0770.0760.1680.59-13.087-0.516
116C_DA12:DT15_E0.219-0.1880.147-11.083-9.805-2.663
113C_DG9:DC18_E-0.2010.0520.13.243-14.311.827
117C_DG13:DC14_E0.238-0.234-0.008-10.81-8.509-2.908
115C_DT11:DA16_E0.1420.0430.2471.054-10.655-0.013
11E_DA21:DT6_C0.219-0.124-0.155-8.203-1.0287.399
14E_DA24:DT3_C0.165-0.090.319-12.646-16.7288.237
12E_DG22:DC5_C-0.4220.151-0.045-1.208-3.2491.076
13E_DT23:DA4_C0.0370.2590.004-0.251-13.3286.468
15E_DT25:DA2_C0.268-0.1820.618-14.56-19.6559.498
119D_DA2:DT25_F-0.023-0.2350.0131.693-18.641-1.87
121D_DA4:DT23_F0.1620.2010.2351.294-7.4934.19
111D_DA8:DT19_F0.483-0.027-0.0691.769-3.9910.759
19D_DA10:DT17_F0.096-0.0990.2740.98-6.6283.108
17D_DA12:DT15_F-0.036-0.0330.0883.03-10.355-0.634
122D_DC5:DG22_F0.4530.096-0.0665.797-9.6653.583
118D_DG1:DC26_F-0.665-0.287-0.159-5.681-10.9451.784
110D_DG9:DC18_F-0.1760.045-0.0121.255-10.1340.204
16D_DG13:DC14_F0.2620.0560.0988.687-11.1211.769
120D_DT3:DA24_F-0.162-0.028-0.2342.35-4.0262.919
123D_DT6:DA21_F-0.59-0.0940.0214.444-3.0796.745
18D_DT11:DA16_F-0.07-0.0530.1292.812-10.7624.507

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.