1M5R: Base Pair Morphology Step Parameters

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NDB ID: PD0334 PDB ID: 1M5R

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	11	CC_DA8DG9:DC18DT19_EE	-0.276	-0.095	3.382	-1.323	1.708	35.906	-0.406	0.252	3.382	2.767	2.143	35.969
1	13	CC_DA10DT11:DA16DT17_EE	-0.113	-0.817	3.256	-0.831	-2.502	32.348	-1.02	0.055	3.31	-4.481	1.488	32.453
1	15	CC_DA12DG13:DC14DT15_EE	0.187	-0.074	3.328	0.52	2.536	36.698	-0.469	-0.224	3.318	4.022	-0.825	36.786
1	12	CC_DG9DA10:DT17DC18_EE	-0.051	-0.535	3.249	-0.03	-2.298	37.418	-0.532	0.075	3.275	-3.579	0.047	37.486
1	14	CC_DT11DA12:DT15DA16_EE	-0.126	-0.387	3.418	0.807	1.419	41.084	-0.712	0.271	3.401	2.022	-1.15	41.115
1	1	EE_DA21DG22:DC5DT6_CC	-0.959	0.098	3.143	-5.055	10.473	30.292	-1.654	0.836	3.121	19.177	9.255	32.399
1	4	EE_DA24DT25:DA2DT3_CC	-0.128	-0.7	3.355	1.041	-0.924	32.009	-1.097	0.425	3.368	-1.675	-1.887	32.038
1	2	EE_DG22DT23:DA4DC5_CC	-0.013	-0.542	3.272	0.446	1.414	33.34	-1.177	0.097	3.247	2.463	-0.777	33.372
1	3	EE_DT23DA24:DT3DA4_CC	0.036	-0.478	3.477	-2.492	4.197	37.745	-1.296	-0.389	3.397	6.455	3.832	38.048
1	5	ED_DT25DG13:DC14DA2_FC	3.095	0.143	-0.335	24.252	-169.375	-121.44	-0.171	1.534	-0.438	85.248	12.206	-175.652
1	17	DD_DA2DT3:DA24DT25_FF	0.525	-0.598	3.263	1.656	-0.515	29.219	-1.071	-0.679	3.297	-1.021	-3.28	29.27
1	19	DD_DA4DC5:DG22DT23_FF	0.071	-0.707	3.244	2.477	4.079	31.791	-1.992	0.307	3.127	7.394	-4.49	32.138
1	9	DD_DA10DG9:DC18DT17_FF	-0.027	0.32	-3.181	3.148	-3.017	-38.339	-0.846	-0.418	-3.136	4.576	4.774	-38.577
1	7	DD_DA12DT11:DA16DT15_FF	0.598	-0.212	-3.245	0.397	-3.159	-39.811	-0.051	0.83	-3.257	4.631	0.582	-39.933
1	20	DD_DC5DT6:DA21DG22_FF	0.692	-0.166	3.346	1.738	8.673	29.465	-2.052	-0.957	3.203	16.587	-3.324	30.736
1	16	DD_DG1DA2:DT25DC26_FF	-0.381	0.427	3.123	-3.87	5.598	40.62	0.02	0.136	3.173	7.996	5.527	41.162
1	10	DD_DG9DA8:DT19DC18_FF	0.498	0.263	-3.266	3.439	-4.205	-33.419	-1.131	0.3	-3.243	7.252	5.932	-33.845
1	6	DD_DG13DA12:DT15DC14_FF	-0.486	-0.163	-3.223	-2.054	-5.218	-36.735	-0.436	-0.49	-3.237	8.221	-3.235	-37.146
1	18	DD_DT3DA4:DT23DA24_FF	-0.178	-0.749	3.188	-2.163	10.322	33.532	-2.703	-0.011	2.846	17.365	3.638	35.106
1	8	DD_DT11DA10:DT17DA16_FF	0.16	0.56	-3.271	-1.187	-2.848	-30.007	-1.652	0.547	-3.196	5.482	-2.285	-30.162

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.