A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PD0334  PDB ID: 1M5R 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
111CC_DA8DG9:DC18DT19_EE-0.276-0.0953.382-1.3231.70835.906-0.4060.2523.3822.7672.14335.969
113CC_DA10DT11:DA16DT17_EE-0.113-0.8173.256-0.831-2.50232.348-1.020.0553.31-4.4811.48832.453
115CC_DA12DG13:DC14DT15_EE0.187-0.0743.3280.522.53636.698-0.469-0.2243.3184.022-0.82536.786
112CC_DG9DA10:DT17DC18_EE-0.051-0.5353.249-0.03-2.29837.418-0.5320.0753.275-3.5790.04737.486
114CC_DT11DA12:DT15DA16_EE-0.126-0.3873.4180.8071.41941.084-0.7120.2713.4012.022-1.1541.115
11EE_DA21DG22:DC5DT6_CC-0.9590.0983.143-5.05510.47330.292-1.6540.8363.12119.1779.25532.399
14EE_DA24DT25:DA2DT3_CC-0.128-0.73.3551.041-0.92432.009-1.0970.4253.368-1.675-1.88732.038
12EE_DG22DT23:DA4DC5_CC-0.013-0.5423.2720.4461.41433.34-1.1770.0973.2472.463-0.77733.372
13EE_DT23DA24:DT3DA4_CC0.036-0.4783.477-2.4924.19737.745-1.296-0.3893.3976.4553.83238.048
15ED_DT25DG13:DC14DA2_FC3.0950.143-0.33524.252-169.375-121.44-0.1711.534-0.43885.24812.206-175.652
117DD_DA2DT3:DA24DT25_FF0.525-0.5983.2631.656-0.51529.219-1.071-0.6793.297-1.021-3.2829.27
119DD_DA4DC5:DG22DT23_FF0.071-0.7073.2442.4774.07931.791-1.9920.3073.1277.394-4.4932.138
19DD_DA10DG9:DC18DT17_FF-0.0270.32-3.1813.148-3.017-38.339-0.846-0.418-3.1364.5764.774-38.577
17DD_DA12DT11:DA16DT15_FF0.598-0.212-3.2450.397-3.159-39.811-0.0510.83-3.2574.6310.582-39.933
120DD_DC5DT6:DA21DG22_FF0.692-0.1663.3461.7388.67329.465-2.052-0.9573.20316.587-3.32430.736
116DD_DG1DA2:DT25DC26_FF-0.3810.4273.123-3.875.59840.620.020.1363.1737.9965.52741.162
110DD_DG9DA8:DT19DC18_FF0.4980.263-3.2663.439-4.205-33.419-1.1310.3-3.2437.2525.932-33.845
16DD_DG13DA12:DT15DC14_FF-0.486-0.163-3.223-2.054-5.218-36.735-0.436-0.49-3.2378.221-3.235-37.146
118DD_DT3DA4:DT23DA24_FF-0.178-0.7493.188-2.16310.32233.532-2.703-0.0112.84617.3653.63835.106
18DD_DT11DA10:DT17DA16_FF0.160.56-3.271-1.187-2.848-30.007-1.6520.547-3.1965.482-2.285-30.162

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.