A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231
Search for released structures

NDB ID: UR0025  PDB ID: 1MHK 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13S_A3:U12_L0.4170.01-0.096-2.348-16.884.085
18S_A8:U7_L-4.632-1.210.29-1.972-6.488-110.074
11S_C1:G14_L0.230.0370.0615.486-5.8633.598
12S_C2:G13_L0.1930.052-0.0333.71-10.3211.946
16S_C6:G9_L0.077-0.208-0.0133.108-12.388-1.325
15S_G5:U10_L-2.519-0.508-0.262-4.426-7.544-0.544
17S_G7:A8_L6.664-4.47-0.0493.994-15.825-4.493
14S_U4:G11_L2.236-0.6030.044.21-12.366-2.437
111L_A3:U4_L-0.217-0.220.3641.334-8.82.595
19L_C1:C6_L-2.404-1.7220.721-14.178-15.23118.219
113L_C5:G2_L1.2-0.0720.0424.003-5.3118.094
114L_C6:C1_L2.404-1.7220.72114.178-15.23118.219
110L_G2:C5_L-1.2-0.0720.042-4.003-5.3118.094
112L_U4:A3_L0.217-0.220.364-1.334-8.82.595

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.