1MJP: Base Pair Morphology Parameters

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As of 23-Sep-2020 number of released structures: 10967

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NDB ID: PD0247 PDB ID: 1MJP

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	C_DA3:DT8_D	-0.371	-0.065	0.616	-2.552	7.98	9.047
1	4	C_DA5:DT6_D	-0.238	-0.235	0.263	2.416	-3.004	-6.925
1	5	C_DC6:DG5_D	1.077	-0.508	0.347	-5.718	-4.494	-6.902
1	8	C_DC9:DG2_D	0.188	-0.309	-0.161	2.845	-6.948	-8.576
1	3	C_DG4:DC7_D	0.207	-0.235	-0.031	1.231	-1.188	-4.133
1	6	C_DG7:DC4_D	-0.82	-0.392	0.415	3.307	-0.203	-7.553
1	1	C_DT2:DA9_D	-0.474	-0.003	0.38	-12.936	-12.313	-4.359
1	7	C_DT8:DA3_D	-0.639	-0.325	0.117	-4.261	-7.514	-5.833
1	9	C_DT10:DA1_D	-0.949	-0.293	0.272	3.995	-5.787	0.373

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.