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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0247
PDB ID:
1MJP
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
C_DA3:DT8_D
-0.371
-0.065
0.616
-2.552
7.98
9.047
1
4
C_DA5:DT6_D
-0.238
-0.235
0.263
2.416
-3.004
-6.925
1
5
C_DC6:DG5_D
1.077
-0.508
0.347
-5.718
-4.494
-6.902
1
8
C_DC9:DG2_D
0.188
-0.309
-0.161
2.845
-6.948
-8.576
1
3
C_DG4:DC7_D
0.207
-0.235
-0.031
1.231
-1.188
-4.133
1
6
C_DG7:DC4_D
-0.82
-0.392
0.415
3.307
-0.203
-7.553
1
1
C_DT2:DA9_D
-0.474
-0.003
0.38
-12.936
-12.313
-4.359
1
7
C_DT8:DA3_D
-0.639
-0.325
0.117
-4.261
-7.514
-5.833
1
9
C_DT10:DA1_D
-0.949
-0.293
0.272
3.995
-5.787
0.373
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.
