A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Sep-2020 number of released structures: 10967
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NDB ID: PD0247  PDB ID: 1MJP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA3:DT8_D-0.371-0.0650.616-2.5527.989.047
14C_DA5:DT6_D-0.238-0.2350.2632.416-3.004-6.925
15C_DC6:DG5_D1.077-0.5080.347-5.718-4.494-6.902
18C_DC9:DG2_D0.188-0.309-0.1612.845-6.948-8.576
13C_DG4:DC7_D0.207-0.235-0.0311.231-1.188-4.133
16C_DG7:DC4_D-0.82-0.3920.4153.307-0.203-7.553
11C_DT2:DA9_D-0.474-0.0030.38-12.936-12.313-4.359
17C_DT8:DA3_D-0.639-0.3250.117-4.261-7.514-5.833
19C_DT10:DA1_D-0.949-0.2930.2723.995-5.7870.373

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.