A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Jul-2019 number of released structures: 10288
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NDB ID: 1MNB  PDB ID: 1MNB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18B_A10:U21_B0.1370.148-0.10720.5723.2161.809
13B_C3:G26_B0.0580.0450.6279.323-20.687-6.94
15B_C5:G24_B0.2070.126-0.37722.866-23.62-5.276
110B_C12:G19_B0.1030.1-0.406-20.226-16.0224.011
11B_G1:C28_B0.0610.0571.08117.393-19.751-8.112
12B_G2:C27_B0.0570.0860.89817.764-21.806-6.235
16B_G6:C23_B0.068-0.266-1.78-15.6165.157-5.634
17B_G8:C22_B0.0150.044-0.713-0.3518.587-8.26
19B_G11:C20_B-0.2340.065-1.049-18.152-23.7174.068
14B_U4:A25_B-0.1850.1540.16913.997-19.738-8.324
111B_U13:A18_B-0.30.140.006-7.79210.467-9.563

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.