1MSW: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: PD0345 PDB ID: 1MSW

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	T_DA121:DT21_N	-0.5	0.268	-0.052	40.226	-9.155	-2.243
1	2	T_DC129:DG29_N	1.45	-0.283	-0.47	51.628	-17.301	3.347
1	4	T_DC124:DG24_N	1.617	-0.073	0.37	18.69	-22.391	6.88
1	6	T_DC122:DG22_N	-0.724	0.273	-0.207	12.778	3.259	-0.385
1	9	T_DC118:G2_R	0.146	-0.037	-0.663	12.155	-2.174	-0.084
1	11	T_DC116:G4_R	0.273	-0.139	-0.853	18.045	-2.821	3.614
1	12	T_DC115:G5_R	-0.22	-0.029	-0.4	16.033	2.231	-1.259
1	1	T_DG130:DC30_N	2.34	0.141	-1.617	34.625	-3.144	-26.765
1	3	T_DG127:DG28_N	-4.697	0.027	1.739	12.91	39.462	9.058
1	5	T_DG123:DC23_N	0.072	1.018	0.62	-1.777	-20.645	13.184
1	10	T_DG117:C3_R	-0.326	-0.131	-0.452	2.825	-2.489	-0.202
1	13	T_DG114:C6_R	-0.059	-0.148	-0.64	-2.925	-13.808	2.968
1	8	T_DT119:A1_R	-0.004	-0.123	-0.336	-4.26	4.549	1.095
1	14	T_DT113:A7_R	0.199	-0.048	-0.296	2.114	-12.583	-6.405

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.