A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: PD0345  PDB ID: 1MSW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17T_DA121:DT21_N-0.50.268-0.05240.226-9.155-2.243
12T_DC129:DG29_N1.45-0.283-0.4751.628-17.3013.347
14T_DC124:DG24_N1.617-0.0730.3718.69-22.3916.88
16T_DC122:DG22_N-0.7240.273-0.20712.7783.259-0.385
19T_DC118:G2_R0.146-0.037-0.66312.155-2.174-0.084
111T_DC116:G4_R0.273-0.139-0.85318.045-2.8213.614
112T_DC115:G5_R-0.22-0.029-0.416.0332.231-1.259
11T_DG130:DC30_N2.340.141-1.61734.625-3.144-26.765
13T_DG127:DG28_N-4.6970.0271.73912.9139.4629.058
15T_DG123:DC23_N0.0721.0180.62-1.777-20.64513.184
110T_DG117:C3_R-0.326-0.131-0.4522.825-2.489-0.202
113T_DG114:C6_R-0.059-0.148-0.64-2.925-13.8082.968
18T_DT119:A1_R-0.004-0.123-0.336-4.264.5491.095
114T_DT113:A7_R0.199-0.048-0.2962.114-12.583-6.405

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.