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As of 11-May-2022 number of released structures: 12077
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NDB ID:
PD0345
PDB ID:
1MSW
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
7
T_DA121:DT21_N
-0.5
0.268
-0.052
40.226
-9.155
-2.243
1
2
T_DC129:DG29_N
1.45
-0.283
-0.47
51.628
-17.301
3.347
1
4
T_DC124:DG24_N
1.617
-0.073
0.37
18.69
-22.391
6.88
1
6
T_DC122:DG22_N
-0.724
0.273
-0.207
12.778
3.259
-0.385
1
9
T_DC118:G2_R
0.146
-0.037
-0.663
12.155
-2.174
-0.084
1
11
T_DC116:G4_R
0.273
-0.139
-0.853
18.045
-2.821
3.614
1
12
T_DC115:G5_R
-0.22
-0.029
-0.4
16.033
2.231
-1.259
1
1
T_DG130:DC30_N
2.34
0.141
-1.617
34.625
-3.144
-26.765
1
3
T_DG127:DG28_N
-4.697
0.027
1.739
12.91
39.462
9.058
1
5
T_DG123:DC23_N
0.072
1.018
0.62
-1.777
-20.645
13.184
1
10
T_DG117:C3_R
-0.326
-0.131
-0.452
2.825
-2.489
-0.202
1
13
T_DG114:C6_R
-0.059
-0.148
-0.64
-2.925
-13.808
2.968
1
8
T_DT119:A1_R
-0.004
-0.123
-0.336
-4.26
4.549
1.095
1
14
T_DT113:A7_R
0.199
-0.048
-0.296
2.114
-12.583
-6.405
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.