1MT4: Base Pair Morphology Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: 1MT4 PDB ID: 1MT4

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	A_A6:U19_A	-0.244	-0.063	0.554	7.798	-16.572	-1.445
1	7	A_A7:U18_A	-0.055	-0.06	-0.483	-3.186	-31.599	-0.404
1	3	A_C3:G22_A	0.813	-0.28	0.393	1.195	-22.349	-3.171
1	8	A_C8:G17_A	0.082	-0.028	-0.471	1.57	-24.026	2.166
1	1	A_G1:C24_A	-0.883	-0.281	0.248	-7.199	-21.714	-3.089
1	2	A_G2:C23_A	-0.69	-0.203	0.421	-2.91	-19.918	-3.667
1	4	A_G4:C21_A	-0.898	-0.335	0.521	0.321	-25.808	-2.715
1	9	A_G9:A16_A	6.716	-4.104	-0.452	0.891	-10.552	-4.837
1	5	A_U5:A20_A	0.212	-0.077	0.483	0.523	-23.301	-4.596
1	10	A_U10:A15_A	1.936	-3.647	-2.49	-17.729	9.732	-50.365

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.