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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID:
1MT4
PDB ID:
1MT4
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
A_A6:U19_A
-0.244
-0.063
0.554
7.798
-16.572
-1.445
1
7
A_A7:U18_A
-0.055
-0.06
-0.483
-3.186
-31.599
-0.404
1
3
A_C3:G22_A
0.813
-0.28
0.393
1.195
-22.349
-3.171
1
8
A_C8:G17_A
0.082
-0.028
-0.471
1.57
-24.026
2.166
1
1
A_G1:C24_A
-0.883
-0.281
0.248
-7.199
-21.714
-3.089
1
2
A_G2:C23_A
-0.69
-0.203
0.421
-2.91
-19.918
-3.667
1
4
A_G4:C21_A
-0.898
-0.335
0.521
0.321
-25.808
-2.715
1
9
A_G9:A16_A
6.716
-4.104
-0.452
0.891
-10.552
-4.837
1
5
A_U5:A20_A
0.212
-0.077
0.483
0.523
-23.301
-4.596
1
10
A_U10:A15_A
1.936
-3.647
-2.49
-17.729
9.732
-50.365
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.