1MT4: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507

Search for released structures

NDB ID: 1MT4 PDB ID: 1MT4

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	AA_A6A7:U18U19_AA	-0.351	-1.362	3.469	4.184	10.891	34.808	-3.652	1.129	2.869	17.604	-6.763	36.654
1	7	AA_A7C8:G17U18_AA	0.069	-1.167	3.009	-1.547	3.881	32.568	-2.663	-0.36	2.848	6.886	2.744	32.828
1	3	AA_C3G4:C21G22_AA	0.146	-1.587	2.704	-0.194	17.272	28.234	-4.838	-0.279	1.508	31.91	0.358	33.006
1	8	AA_C8G9:A16G17_AA	0.401	-0.494	3.589	1.747	3.137	62.759	-0.628	-0.298	3.573	3.01	-1.676	62.852
1	1	AA_G1G2:C23C24_AA	-0.264	-1.479	2.968	-2.83	4.3	33.153	-3.186	0.048	2.773	7.48	4.922	33.539
1	2	AA_G2C3:G22C23_AA	0.057	-1.327	3.057	1.189	1.445	38.935	-2.15	0.048	3.008	2.167	-1.783	38.978
1	4	AA_G4U5:A20C21_AA	0.129	-1.535	3.106	0.496	-0.367	38.637	-2.277	-0.136	3.121	-0.555	-0.75	38.642
1	9	AA_G9U10:A15A16_AA	-2.771	-1.88	4.631	34.994	3.82	10.847	-3.383	8.088	-1.435	7.966	-72.976	36.784
1	5	AA_U5A6:U19A20_AA	0.007	-1.752	2.658	-1.64	12.79	29.332	-4.812	-0.223	1.757	23.858	3.059	31.984

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.