1MWL: Base Pair Morphology Parameters

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As of 25-May-2022 number of released structures: 12098

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NDB ID: DR0008 PDB ID: 1MWL

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	A_A9:U36_B	0.288	-0.189	0.021	3.565	-16.562	2.617
1	2	A_C3:G43_B	0.124	-0.068	0.074	-2.747	0.773	-0.881
1	5	A_C6:G40_B	0.385	-0.301	-0.338	-3.332	2.95	-0.978
1	6	A_C8:G37_B	0.081	-0.165	-0.008	3.783	-15.295	1.685
1	8	A_C10:G35_B	0.247	0.004	0.058	5.345	-19.414	5.128
1	9	A_C11:G34_B	-0.163	-0.236	-0.175	7.074	-9.501	0.804
1	16	A_C20:G26_B	-0.032	-0.353	-0.016	-1.02	-2.545	-1.323
1	18	A_C22:G24_B	0.337	-0.261	-0.306	4.554	-4.818	-4.449
1	1	A_G2:C44_B	-0.751	-0.49	-0.085	-6.243	-5.306	-8.348
1	3	A_G4:C42_B	-0.148	-0.281	-0.052	-0.922	-3.259	2.994
1	10	A_G12:C33_B	-0.228	-0.039	-0.303	-5.922	-13.556	-0.838
1	11	A_G13:C32_B	-0.087	-0.156	0.162	-3.024	-12.494	1.084
1	13	A_G15:C30_B	0.102	-0.087	0.101	-3.558	-8.233	1.528
1	14	A_G18:C28_B	-0.005	-0.075	-0.288	4.374	-3.011	3.452
1	17	A_G21:C25_B	-0.146	-0.356	0.076	-0.48	-0.853	-4.989
1	4	A_U5:U41_B	-2.319	-1.497	-0.533	3.097	-11.765	-7.448
1	12	A_U14:A31_B	0.171	-0.103	0.222	-10.168	-16.577	-0.145
1	15	A_U19:U27_B	2.283	-1.738	-0.262	-1.109	-9.677	-10.42

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.