1MWL: Base Pair Morphology Step Parameters

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NDB ID: DR0008 PDB ID: 1MWL

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	AA_A9C10:G35U36_BB	1.008	-1.914	3.231	1.503	2.189	27.786	-4.476	-1.742	3.123	4.546	-3.121	27.91
1	2	AA_C3G4:C42G43_BB	0.14	-2.022	3.229	-0.524	4.719	26.813	-5.4	-0.42	2.835	10.075	1.12	27.222
1	5	AA_C8A9:U36G37_BB	-0.191	-1.445	3.125	0.265	11.707	33.359	-3.915	0.349	2.491	19.655	-0.444	35.299
1	7	AA_C10C11:G34G35_BB	-0.991	-1.979	3.197	-1.323	5.294	29.57	-4.828	1.657	2.848	10.262	2.565	30.059
1	8	AA_C11G12:C33G34_BB	-0.132	-1.638	3.638	0.48	10.885	31.249	-4.78	0.316	2.917	19.48	-0.859	33.049
1	14	AA_C20G21:C25G26_BB	0.119	-1.78	3.093	-0.657	5.192	32.406	-3.956	-0.313	2.779	9.229	1.169	32.814
1	1	AA_G2C3:G43C44_BB	0.06	-1.589	3.216	-2.264	1.219	34.268	-2.876	-0.446	3.149	2.065	3.836	34.362
1	3	AA_G4U5:U41C42_BB	-0.55	-1.886	3.203	-0.044	1.64	23.786	-5.081	1.316	3.068	3.974	0.107	23.841
1	9	AA_G12G13:C32C33_BB	0.765	-1.726	3.008	-1.302	9.222	30.968	-4.477	-1.569	2.376	16.801	2.372	32.306
1	10	AA_G13U14:A31C32_BB	-0.272	-1.486	3.371	0.41	2.441	34.058	-2.923	0.529	3.257	4.16	-0.699	34.145
1	12	AA_G18U19:U27C28_BB	-1.18	-2.106	3.505	0.101	2.869	39.687	-3.443	1.746	3.348	4.219	-0.148	39.787
1	15	AA_G21C22:G24C25_BB	0.392	-2.225	3.215	4.375	1.489	29.108	-4.684	0.139	3.123	2.94	-8.636	29.464
1	4	AA_U5C6:G40U41_BB	1.008	-2.411	3.633	-1.808	2.677	44.163	-3.469	-1.52	3.447	3.555	2.401	44.275
1	11	AA_U14G15:C30A31_BB	0.32	-1.681	2.894	3.304	9.138	31.948	-4.175	-0.107	2.357	16.141	-5.837	33.356
1	13	AA_U19C20:G26U27_BB	0.292	-2.41	3.25	1.079	2.988	22.176	-7.254	-0.371	2.915	7.716	-2.787	22.399

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.