A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Nov-2019 number of released structures: 10455
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NDB ID: RR0057  PDB ID: 1N33 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
14A_A10:U24_A120
133A_A32:U552_A120
134A_A33:U551_A120
142A_A53:U358_A120
147A_A60:G107_A60
165A_A109:G324_A00
189A_A119:U287_A424
1122A_A140:U223_A120
1123A_A141:U222_A120
1125A_A143:G220_A08
1136A_A171:C150_A425
1137A_A172:A149_A45
1143A_A179:A196_A45
194A_A243:A282_A45
195A_A246:G281_A911
1163A_A300:U565_A50
166A_A327:U323_A00
167A_A329:C322_A425
174A_A338:G351_A18
1164A_A383:G380_A00
1169A_A389:U375_A120
1173A_A393:U367_A120
1202A_A430:A414_A00
1203A_A431:U429_A323
1204A_A432:G410_A911
1210A_A439:U495_A424
1211A_A440:G494_A100
1218A_A448:U486_A424
1221A_A452:U480_A424
1222A_A453:C479_A20
1184A_A499:U405_A323
1194A_A533:A520_A00
1237A_A563:U884_A221
1315A_A611:G629_A18
1318A_A614:U626_A120
1262A_A632:G606_A1011
1270A_A640:U598_A120
1271A_A642:U641_A00
1277A_A648:U591_A120
1283A_A655:U751_A120
1291A_A663:G742_A08
1302A_A675:A715_A00
1303A_A676:G714_A18
1311A_A684:A706_A10
1314A_A687:G703_A1011
1327A_A722:A733_A21
1281A_A753:U652_A424
1252A_A759:U582_A424
1332A_A766:U813_A424
1333A_A768:C811_A00
1342A_A780:A802_A00
1343A_A781:U801_A424
1344A_A782:G800_A1011
1367A_A889:A908_A82
1369A_A892:G906_A1011
17A_A914:G21_A1011
111A_A918:U17_A120
112A_A919:A16_A10
116A_A923:U1393_A120
126A_A935:U1380_A120
128A_A937:C1378_A60
1405A_A986:U1219_A00
1417A_A1005:G1026_A120
1418A_A1035:C1027_A10
1467A_A1123:U1150_A00
1461A_A1179:G1156_A610
1385A_A1225:U955_A120
1388A_A1229:U952_A120
1395A_A1236:G945_A08
1485A_A1239:A1299_A00
1490A_A1245:U1292_A120
1493A_A1248:A1289_A00
1495A_A1252:A1285_A00
1500A_A1261:G1274_A1011
1468A_A1280:C1149_A50
1508A_A1306:G1331_A911
1381A_A1346:A1375_A82
1518A_A1349:G1373_A911
1519A_A1350:U1372_A120
1525A_A1357:G1365_A08
1401A_A1360:A978_A00
1538A_A1413:G1487_A18
1542A_A1418:G1482_A1011
1551A_A1428:U1472_A00
1555A_A1434:G1467_A00
1529A_A1502:G1505_A00
1567A_A1507:U1528_A120
1573A_A1513:U1522_A120
135A_C34:G550_A119
137A_C36:G548_A119
139A_C47:G361_A119
143A_C54:G357_A119
146A_C58:G354_A119
150A_C63:G104_A119
152A_C67:G102_A119
156A_C73:G97_A119
157A_C74:G96_A119
159A_C76:G93_A119
197A_C123:G238_A119
1104A_C131:G231_A119
1105A_C132:G230_A119
1118A_C136:G227_A119
1119A_C137:G226_A119
1130A_C165:G156_A10
1134A_C169:A152_A20
1138A_C174:G148_A119
1139A_C175:G147_A10
1140A_C176:G146_A119
1141A_C177:G145_A119
1142A_C178:G144_A119
1116A_C193:G184_A119
1117A_C194:G183_A119
1129A_C201:G216_A119
190A_C240:G286_A119
191A_C241:G285_A119
192A_C242:G284_A119
193A_C245:C283_A10
1147A_C248:G276_A119
186A_C290:G310_A119
187A_C291:G309_A119
1160A_C295:G302_A119
170A_C334:G319_A119
171A_C335:G318_A119
172A_C336:G317_A119
173A_C337:G316_A119
175A_C339:G350_A119
177A_C341:G348_A00
178A_C342:G347_A119
1166A_C385:G378_A119
1167A_C386:G377_A119
1170A_C390:G371_A119
1175A_C395:G46_A119
1177A_C398:G44_A119
1179A_C400:G42_A119
1180A_C401:G41_A10
1182A_C403:G39_A119
1205A_C433:G409_A119
1207A_C435:G407_A00
1208A_C436:G406_A00
1212A_C442:G492_A119
1213A_C443:G491_A119
1214A_C444:G490_A10
1219A_C449:G484_A00
1223A_C454:A478_A00
1224A_C455:G477_A119
1225A_C456:G476_A119
1226A_C457:G475_A119
1227A_C458:G474_A00
1186A_C501:G544_A119
1188A_C503:G542_A10
1189A_C504:G541_A119
1231A_C507:G524_A119
1232A_C508:A509_A00
1190A_C511:G540_A119
1191A_C513:G538_A119
1192A_C514:G537_A119
1234A_C522:G527_A119
1240A_C569:G881_A119
1261A_C586:G755_A119
1316A_C612:G628_A10
1317A_C613:G627_A119
1319A_C615:G625_A119
1322A_C618:A622_A20
1264A_C634:G604_A119
1272A_C643:G597_A119
1274A_C645:G594_A10
1276A_C647:G592_A119
1280A_C651:G588_A119
1284A_C656:G750_A119
1306A_C679:G711_A119
1307A_C680:G710_A119
1308A_C681:G709_A10
1324A_C689:G698_A119
1330A_C726:G731_A119
1255A_C762:G579_A119
1257A_C764:G577_A119
1335A_C770:G809_A119
1341A_C779:G803_A119
1345A_C783:G799_A119
1346A_C784:G798_A119
1350A_C817:G1529_A119
1243A_C822:G878_A119
1245A_C824:G876_A119
1247A_C826:G874_A119
1354A_C832:G854_A119
1356A_C834:G852_A119
1362A_C862:G867_A119
1370A_C893:U244_A118
1373A_C896:G903_A119
1374A_C897:G902_A119
117A_C924:G1392_A119
122A_C930:G1387_A119
123A_C931:G1386_A119
124A_C932:G1385_A119
1379A_C934:A938_A00
127A_C936:G1379_A119
1398A_C962:G973_A119
1403A_C984:G1221_A119
1404A_C985:G1220_A119
1408A_C989:G1216_A119
1409A_C990:G1215_A119
1410A_C995:A1046_A50
1413A_C999:G1042_A00
1419A_C1006:G1023_A00
1420A_C1007:G1022_A00
1421A_C1008:G1021_A00
1426A_C1029:G1032_A119
1415A_C1037:A1004_A00
1431A_C1051:G1207_A119
1437A_C1060:G1197_A119
1440A_C1063:G1193_A119
1443A_C1069:G1106_A119
1446A_C1071:G1104_A119
1450A_C1075:G1082_A119
1451A_C1076:G1081_A119
1458A_C1113:G1187_A119
1459A_C1115:G1185_A10
1460A_C1116:G1184_A119
1462A_C1118:G1155_A119
1463A_C1119:G1154_A119
1471A_C1128:G1143_A10
1472A_C1132:G1142_A00
1476A_C1158:G1181_A119
1478A_C1161:G1175_A10
1479A_C1162:G1174_A10
1480A_C1163:G1173_A119
1482A_C1165:G1171_A119
1433A_C1200:U1205_A60
1386A_C1226:G954_A10
1387A_C1228:G953_A119
1389A_C1230:G951_A119
1393A_C1234:G947_A119
1396A_C1237:G1337_A119
1487A_C1242:G1295_A119
1488A_C1243:G1294_A119
1489A_C1244:G1293_A119
1491A_C1246:G1291_A119
1494A_C1249:A1288_A425
1497A_C1254:G1283_A00
1498A_C1259:G1276_A00
1499A_C1260:A1275_A00
1501A_C1262:G1273_A119
1502A_C1263:G1272_A119
1503A_C1264:G1271_A119
1505A_C1303:G1334_A119
1516A_C1314:G1323_A00
1400A_C1317:C979_A00
1376A_C1342:G941_A119
1378A_C1344:G939_A119
1520A_C1352:G1370_A119
1522A_C1354:G1368_A119
1528A_C1399:G1504_A119
1530A_C1404:G1497_A119
1533A_C1407:G1494_A119
1534A_C1409:G1491_A119
1536A_C1411:G1489_A119
1537A_C1412:G1488_A119
1547A_C1424:G1476_A119
1549A_C1426:G1474_A119
1552A_C1429:G1471_A119
1553A_C1430:G1470_A10
1554A_C1431:G1469_A119
1558A_C1437:G1464_A119
1560A_C1439:G1462_A119
1561A_C1440:G1461_A119
1564A_C1448:G1455_A119
1565A_C1449:G1454_A119
1569A_C1509:G1526_A119
1574A_C1514:G1521_A119
1575A_C1515:G1520_A119
11A_G7:U560_A00
13A_G9:C25_A119
15A_G11:C23_A119
129A_G27:C556_A119
130A_G28:C555_A119
131A_G29:C554_A119
136A_G35:C549_A119
141A_G52:U359_A128
145A_G57:C355_A119
148A_G61:C106_A119
151A_G66:C103_A119
153A_G68:A101_A18
154A_G69:C99_A119
155A_G70:U98_A128
158A_G75:U95_A10
160A_G77:C92_A119
161A_G78:C91_A119
162A_G79:U90_A028
163A_G80:C89_A119
180A_G111:G331_A00
181A_G112:A315_A08
182A_G113:C314_A119
184A_G115:C312_A119
196A_G122:U239_A028
198A_G124:C237_A119
1100A_G126:C235_A119
1101A_G127:C234_A119
1102A_G128:C233_A119
1107A_G129A:C190C_A00
1120A_G138:C225_A119
1121A_G139:C224_A119
1124A_G142:C221_A119
1145A_G158:C163_A00
1131A_G166:C155_A10
1132A_G167:C154_A119
1133A_G168:C153_A119
1108A_G190G:C190B_A119
1109A_G190H:C190A_A119
1110A_G190I:C190_A119
1112A_G190K:C188_A119
1114A_G191:C186_A119
1126A_G198:C219_A119
1127A_G199:C218_A10
1128A_G200:C217_A10
1146A_G247:C277_A119
1151A_G254:C272_A119
1152A_G255:C271_A119
1154A_G257:C269_A119
1155A_G258:C268_A119
1156A_G259:C267_A119
1157A_G260:G265_A00
185A_G289:C311_A119
188A_G292:C308_A119
1158A_G293:U304_A028
1162A_G299:G566_A00
168A_G332:A321_A18
169A_G333:C320_A119
1165A_G384:C379_A119
1171A_G391:C370_A119
1172A_G392:C369_A10
1174A_G394:C366_A50
1176A_G396:U45_A128
1178A_G399:C43_A119
1181A_G402:C40_A119
1196A_G423:U420_A20
1197A_G424:C419_A00
1198A_G425:C418_A119
1199A_G426:C417_A119
1201A_G428:A415_A00
1215A_G445:C489_A119
1216A_G446:C488_A119
1217A_G447:A487_A100
1220A_G450:C483_A119
1228A_G459:G462_A00
1185A_G500:C545_A10
1187A_G502:C543_A119
1229A_G505:C526_A119
1230A_G506:C525_A119
1193A_G515:C536_A10
1233A_G521:C528_A119
1235A_G530:A1492_A00
12A_G558:A26_A1011
1238A_G567:C883_A119
1239A_G568:C882_A119
1250A_G570:C866_A119
1241A_G575:C880_A10
1259A_G584:U757_A028
1260A_G585:C756_A119
1320A_G616:C624_A119
1321A_G617:C623_A119
1263A_G633:U605_A128
1265A_G635:U603_A028
1267A_G637:C601_A119
1268A_G638:C600_A119
1269A_G639:C599_A119
1273A_G644:C596_A119
1278A_G649:C590_A119
1279A_G650:C589_A119
1282A_G654:C754_A119
1285A_G657:C749_A119
1286A_G658:C747_A119
1288A_G660:C745_A119
1289A_G661:C744_A119
1290A_G662:U743_A128
1292A_G664:G741_A00
1293A_G666:U740_A028
1294A_G667:C739_A119
1295A_G668:C738_A119
1297A_G670:C736_A119
1298A_G671:C735_A119
1300A_G673:C717_A119
1301A_G674:A716_A18
1309A_G682:C708_A119
1310A_G683:C707_A119
1312A_G685:U705_A00
1323A_G688:C699_A119
1325A_G690:U697_A00
1326A_G691:A696_A00
1328A_G724:A665_A09
1329A_G725:C732_A119
1331A_G727:G730_A00
1253A_G760:G581_A00
1254A_G761:U580_A028
1256A_G763:C578_A119
1258A_G765:A816_A00
1334A_G769:C810_A119
1336A_G771:C808_A119
1338A_G773:C806_A119
1339A_G774:C805_A119
1340A_G778:U804_A128
1347A_G785:C797_A119
1348A_G786:C796_A119
1242A_G821:C879_A119
1244A_G823:C877_A119
1246A_G825:C875_A119
1351A_G829:C857_A119
1352A_G830:C856_A119
1358A_G836:U850_A128
1359A_G837:C849_A119
1360A_G838:C848_A119
1361A_G861:C868_A119
1363A_G885:C912_A119
1364A_G886:U911_A128
1365A_G887:C910_A119
1366A_G888:A909_A911
1371A_G894:U905_A028
1372A_G895:C904_A119
1375A_G898:A901_A00
19A_G916:C19_A119
110A_G917:C18_A119
115A_G922:C1395_A119
118A_G925:U1391_A128
119A_G927:U1390_A028
120A_G928:C1389_A10
121A_G929:C1388_A119
125A_G933:C1384_A119
1383A_G944:A1339_A100
1399A_G963:C972_A119
1406A_G987:C1218_A119
1407A_G988:C1217_A119
1412A_G998:C1043_A00
1414A_G1003:C1039_A10
1422A_G1009:U1020_A028
1423A_G1010:C1019_A119
1425A_G1013:A1016_A00
1427A_G1030A:G1031_A00
1416A_G1034:C1028_A00
1428A_G1047:C1210_A10
1429A_G1048:C1209_A00
1430A_G1050:C1208_A10
1435A_G1057:C1203_A00
1436A_G1058:G1053_A00
1438A_G1061:C1195_A119
1441A_G1064:C1192_A00
1442A_G1068:C1107_A119
1447A_G1072:C1103_A119
1449A_G1074:U1083_A028
1452A_G1077:A1080_A00
1454A_G1087:C1098_A00
1455A_G1088:C1097_A119
1456A_G1089:C1096_A119
1464A_G1120:C1153_A10
1470A_G1127:C1145_A119
1473A_G1133:C1141_A119
1474A_G1134:C1140_A10
1477A_G1160:A1176_A00
1481A_G1164:C1172_A119
1483A_G1166:A1169_A00
1484A_G1224:C1362_A10
1390A_G1231:U950_A128
1392A_G1233:C948_A119
1486A_G1241:C1296_A119
1496A_G1253:C1284_A119
1504A_G1265:C1270_A00
1506A_G1304:A1333_A50
1507A_G1305:A1332_A00
1511A_G1309:C1328_A119
1512A_G1310:C1327_A119
1513A_G1311:C1326_A119
1514A_G1312:C1325_A10
1377A_G1343:C940_A119
1521A_G1353:C1369_A119
1523A_G1355:C1367_A119
1524A_G1356:C1366_A119
1402A_G1361:A1319_A610
1527A_G1401:C1501_A119
1531A_G1405:C1496_A119
1535A_G1410:C1490_A00
1540A_G1415:U1485_A028
1541A_G1416:C1484_A10
1543A_G1419:U1481_A028
1544A_G1421:C1479_A10
1545A_G1422:C1478_A10
1546A_G1423:C1477_A119
1556A_G1435:C1466_A119
1559A_G1438:C1463_A119
1562A_G1441:A1460_A911
1563A_G1447:C1459_A119
1568A_G1508:C1527_A119
1571A_G1511:C1524_A119
16A_U12:G22_A128
18A_U13:U20_A40
132A_U30:A553_A120
138A_U37:A397_A221
144A_U56:A356_A120
149A_U62:G105_A128
164A_U81:A88_A00
183A_U114:A313_A120
199A_U125:G236_A128
1103A_U129:G232_A028
1106A_U133:U229_A116
1135A_U170:A151_A424
1144A_U180:A195_A424
1111A_U190J:G189_A128
1113A_U190L:C187_A00
1115A_U192:A185_A120
1148A_U249:G275_A128
1149A_U252:A274_A120
1150A_U253:A273_A120
1153A_U256:A270_A120
1159A_U294:A303_A120
1161A_U296:G301_A128
176A_U340:A349_A120
179A_U343:G346_A20
140A_U365:U49_A00
1168A_U387:G376_A028
1183A_U404:U498_A30
1200A_U427:G416_A028
1206A_U434:A408_A120
1209A_U437:A496_A424
1195A_U516:C519_A50
1251A_U571:A865_A120
1266A_U636:A602_A120
1275A_U646:G593_A128
1287A_U659:A746_A120
1296A_U669:A737_A120
1299A_U672:G734_A028
1304A_U677:G713_A00
1305A_U678:A712_A120
1313A_U686:A704_A424
1337A_U772:A807_A120
1349A_U788:A794_A00
1249A_U820:A873_A323
1248A_U827:A872_A221
1353A_U831:G855_A128
1355A_U833:G853_A128
1357A_U835:G851_A10
1368A_U891:A907_A424
113A_U920:G15_A028
114A_U921:A1396_A120
1382A_U943:A1340_A00
1384A_U960:U956_A213
1397A_U961:A1201_A00
1411A_U997:A1044_A10
1424A_U1012:G1017_A128
1432A_U1052:G1206_A028
1434A_U1056:A1204_A00
1439A_U1062:U1194_A00
1444A_U1070:A1105_A120
1448A_U1073:A1102_A120
1445A_U1085:G1094_A00
1453A_U1086:G1099_A10
1457A_U1090:U1095_A116
1465A_U1121:A1152_A120
1466A_U1122:A1151_A120
1469A_U1126:U1148_A00
1475A_U1135:G1138_A20
1391A_U1232:A949_A120
1394A_U1235:A946_A120
1492A_U1247:G1290_A028
1509A_U1307:U1330_A116
1510A_U1308:A1329_A10
1515A_U1313:A1324_A00
1380A_U1345:U1376_A213
1517A_U1348:A1374_A424
1526A_U1358:A1363_A221
1532A_U1406:U1495_A00
1539A_U1414:G1486_A028
1548A_U1425:G1475_A128
1550A_U1427:A1473_A120
1557A_U1436:C1465_A00
1566A_U1450:G1453_A00
1570A_U1510:G1525_A128
1572A_U1512:G1523_A128
1579Y_A36:U1_Z120
1577Y_C31:G39_Y10
1576Y_G30:PSU40_Y127
1578Y_G34:U3_Z128
1236Y_G35:U2_Z10

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)