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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
PD0358
PDB ID:
1N48
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
B_DA1806:DT1913_C
-0.185
-0.137
0.072
-0.788
-7.685
3.552
1
7
B_DA1807:DT1912_C
0.133
-0.156
0.074
8.95
-8.186
1.639
1
10
B_DA1810:DT1909_C
0.324
-0.108
-0.203
-10.065
-9.41
0.747
1
11
B_DC1811:DG1908_C
0.289
-0.116
0.354
-11.923
-5.695
0.852
1
1
B_DG1801:DC1918_C
0.099
-0.151
-0.035
1.183
-7.603
-3.579
1
2
B_DG1802:DC1917_C
-0.161
0.1
0.211
13.756
-2.619
2.542
1
3
B_DG1803:DC1916_C
-0.129
-0.123
0.207
4.86
-7.47
-1.68
1
4
B_DG1804:DC1915_C
-0.33
-0.283
0.436
6.572
-0.416
-7.827
1
5
B_DG1805:DC1914_C
-0.087
-0.286
-0.007
0.97
-6.094
-5.438
1
8
B_DG1808:DC1911_C
0.116
-0.097
0.166
7.909
-7.014
1.809
1
9
B_DG1809:DC1910_C
-0.231
-0.328
-0.13
-7.535
-10.801
-0.07
1
12
B_DT1812:DA1907_C
-0.188
-0.002
0.112
-8.92
-5.194
-3.309
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.