1N48: Base Pair Morphology Parameters

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NDB ID: PD0358 PDB ID: 1N48

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	B_DA1806:DT1913_C	-0.185	-0.137	0.072	-0.788	-7.685	3.552
1	7	B_DA1807:DT1912_C	0.133	-0.156	0.074	8.95	-8.186	1.639
1	10	B_DA1810:DT1909_C	0.324	-0.108	-0.203	-10.065	-9.41	0.747
1	11	B_DC1811:DG1908_C	0.289	-0.116	0.354	-11.923	-5.695	0.852
1	1	B_DG1801:DC1918_C	0.099	-0.151	-0.035	1.183	-7.603	-3.579
1	2	B_DG1802:DC1917_C	-0.161	0.1	0.211	13.756	-2.619	2.542
1	3	B_DG1803:DC1916_C	-0.129	-0.123	0.207	4.86	-7.47	-1.68
1	4	B_DG1804:DC1915_C	-0.33	-0.283	0.436	6.572	-0.416	-7.827
1	5	B_DG1805:DC1914_C	-0.087	-0.286	-0.007	0.97	-6.094	-5.438
1	8	B_DG1808:DC1911_C	0.116	-0.097	0.166	7.909	-7.014	1.809
1	9	B_DG1809:DC1910_C	-0.231	-0.328	-0.13	-7.535	-10.801	-0.07
1	12	B_DT1812:DA1907_C	-0.188	-0.002	0.112	-8.92	-5.194	-3.309

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.