1N48: Base Pair Morphology Step Parameters

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NDB ID: PD0358 PDB ID: 1N48

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	BB_DA1806DA1807:DT1912DT1913_CC	-0.037	0.347	3.127	1.292	6.533	30.907	-0.533	0.299	3.129	12.084	-2.39	31.599
1	7	BB_DA1807DG1808:DC1911DT1912_CC	0.19	-0.174	3.313	-2.189	1.757	35.267	-0.548	-0.638	3.283	2.894	3.606	35.375
1	10	BB_DA1810DC1811:DG1908DT1909_CC	-0.398	-0.301	3.353	-5.976	-3.514	37.969	-0.004	-0.165	3.388	-5.346	9.092	38.574
1	11	BB_DC1811DT1812:DA1907DG1908_CC	-0.552	-0.453	3.175	1.745	1.191	32.059	-1.024	1.299	3.123	2.154	-3.156	32.127
1	1	BB_DG1801DG1802:DC1917DC1918_CC	1.082	-0.071	3.038	-1.99	-2.485	30.117	0.326	-2.44	2.959	-4.765	3.817	30.281
1	2	BB_DG1802DG1803:DC1916DC1917_CC	-1.098	-0.32	3.533	-2.713	1.7	36.518	-0.762	1.341	3.585	2.706	4.319	36.654
1	3	BB_DG1803DG1804:DC1915DC1916_CC	0.565	-0.323	3.164	-1.537	4.477	31.658	-1.359	-1.291	3.06	8.149	2.798	32.001
1	4	BB_DG1804DG1805:DC1914DC1915_CC	-0.499	-0.353	3.351	-0.085	10.55	37.048	-1.862	0.747	3.139	16.205	0.13	38.47
1	5	BB_DG1805DA1806:DT1913DC1914_CC	-0.337	-0.301	3.288	-2.506	5.425	34.506	-1.319	0.183	3.221	9.061	4.185	35.004
1	8	BB_DG1808DG1809:DC1910DC1911_CC	-0.222	-0.985	3.585	1.011	2.17	39.921	-1.711	0.451	3.522	3.175	-1.48	39.99
1	9	BB_DG1809DA1810:DT1909DC1910_CC	-0.63	-0.198	3.307	-0.323	0.69	35.181	-0.432	0.993	3.308	1.141	0.534	35.189

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.