1NBR: Base Pair Morphology Step Parameters

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NDB ID: 1NBR PDB ID: 1NBR

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_A3G4:C26U27_AA	0.063	-2.165	3.141	-1.109	6.642	11.816	-14.442	-1.152	1.672	29.347	4.9	13.594
1	10	AA_A11A12:U19U20_AA	-0.625	-1.675	3.005	-11.567	-1.638	31.966	-2.613	-0.719	3.118	-2.858	20.18	33.981
1	11	AA_A12C13:G17U19_AA	0.578	-1.16	2.949	4.288	2.381	32.703	-2.401	-0.362	2.91	4.199	-7.563	33.058
1	9	AA_C10A11:U20G21_AA	0.664	-1.423	4.147	-1.482	10.917	34.286	-4.175	-1.328	3.514	17.953	2.437	35.962
1	1	AA_G1G2:C28C29_AA	0.213	-1.58	2.76	-5.689	3.45	30.056	-3.525	-1.305	2.487	6.552	10.805	30.767
1	2	AA_G2A3:U27C28_AA	-0.729	-1.962	3.437	1.318	3.263	42.204	-3.058	1.147	3.26	4.522	-1.826	42.343
1	4	AA_G4U5:G25C26_AA	-0.265	-0.946	3.112	5.183	-0.125	54.638	-1.019	0.582	3.079	-0.136	-5.632	54.865
1	6	AA_G6U8:A23C24_AA	-2.759	-0.952	3.562	-11.824	-18.283	57.489	0.125	2.026	4.116	-18.304	11.838	61.144
1	5	AA_U5G6:C24G25_AA	-0.405	-1.121	3.598	0.513	32.87	6.068	-6.501	0.775	-0.446	79.82	-1.246	33.414
1	7	AA_U8U9:G22A23_AA	0.455	-1.391	3.009	3.664	-0.539	46.275	-1.722	-0.29	3.049	-0.684	-4.653	46.415
1	8	AA_U9C10:G21G22_AA	0.449	-2.786	2.513	12.521	7.099	11.663	-11.094	2.893	0.826	25.242	-44.52	18.507

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.