1NC0: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237

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NDB ID: 1NC0 PDB ID: 1NC0

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_C5:G20_A	-0.619	-0.113	-0.085	3.922	-4.978	-3.258
1	6	A_C6:G19_A	0.667	-0.336	-0.027	0.831	-0.29	-1.355
1	7	A_C7:G17_A	-0.653	-0.046	0.009	-2.095	-2.945	-8.109
1	8	A_C8:G16_A	0.877	-0.238	-0.088	2.303	-2.25	2.621
1	1	A_G1:C24_A	-0.924	-0.184	-0.204	-4.19	-3.145	3.686
1	2	A_G2:C23_A	0.484	-0.223	-0.061	-2.224	-7.699	-2.034
1	9	A_G10:A14_A	6.607	-3.553	0.398	8.764	4.07	11.645
1	3	A_U3:A22_A	0.694	-0.295	-0.068	-0.897	-4.257	-2.051
1	4	A_U4:A21_A	-0.013	0.042	-0.095	0.982	-2.305	-1.72

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.