A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PDT015  PDB ID: 1NFK 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA5:DT8_D0.1990.2070.2838.575-10.412-2.525
15C_DA6:DT7_D-0.035-0.1070.1947.519-25.446-2.871
18C_DC9:DG4_D0.1890.1480.083-5.053-7.426-5.463
19C_DC10:DG3_D0.36-0.2750.268-0.635-3.721-5.01
110C_DC11:DG2_D-0.187-0.271-0.0869.673-4.367-1.828
11C_DG2:DC11_D-0.008-0.576-0.304-18.833-2.764-2.821
12C_DG3:DC10_D0.055-0.111-0.126-5.818-9.841-4.17
13C_DG4:DC9_D-0.6080.175-0.53-4.118-10.4694.082
16C_DT7:DA6_D0.433-0.10.562-5.307-17.39-0.016
17C_DT8:DA5_D0.3070.3380.32-6.521-14.5893.948

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.