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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 3-Aug-2022 number of released structures: 12227
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NDB ID:
PD0379
PDB ID:
1NK6
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
B_DA24:DT9_C
-0.101
-0.172
0.116
-1.18
-17.122
1.671
1
6
B_DA27:DT6_C
0.227
-0.084
0.08
6.744
-10.417
9.644
1
2
B_DC23:DG10_C
0.028
0.201
0.353
-6.461
-6.696
0.446
1
8
B_DC29:DG4_C
0.382
-0.206
-0.673
23.263
-4.306
-2.49
1
1
B_DG22:DC11_C
-0.774
-0.406
0.315
-5.802
-10.82
-3.788
1
5
B_DG26:DC7_C
-0.163
-0.069
-0.036
7.119
10.661
-0.386
1
4
B_DT25:DA8_C
0.113
0.018
-0.246
-7.239
-8.065
3.734
1
7
B_DT28:DA5_C
-0.038
-0.096
-0.134
20.216
-9.256
10.22
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.