1NK6: Base Pair Morphology Parameters

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As of 23-Nov-2022 number of released structures: 12471

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NDB ID: PD0379 PDB ID: 1NK6

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	B_DA24:DT9_C	-0.101	-0.172	0.116	-1.18	-17.122	1.671
1	6	B_DA27:DT6_C	0.227	-0.084	0.08	6.744	-10.417	9.644
1	2	B_DC23:DG10_C	0.028	0.201	0.353	-6.461	-6.696	0.446
1	8	B_DC29:DG4_C	0.382	-0.206	-0.673	23.263	-4.306	-2.49
1	1	B_DG22:DC11_C	-0.774	-0.406	0.315	-5.802	-10.82	-3.788
1	5	B_DG26:DC7_C	-0.163	-0.069	-0.036	7.119	10.661	-0.386
1	4	B_DT25:DA8_C	0.113	0.018	-0.246	-7.239	-8.065	3.734
1	7	B_DT28:DA5_C	-0.038	-0.096	-0.134	20.216	-9.256	10.22

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.