A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: PD0388  PDB ID: 1NNE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA1904:DT1970_D-1.453-0.018-0.775-2.486-30.35914.934
16C_DA1909:DT1965_D-0.7-0.481-0.42-4.044-20.862-0.745
12C_DC1905:DG1969_D-0.1760.254-1.11712.862-13.331-3.685
14C_DC1907:DG1967_D-0.6470.5760.589-9.349-12.037.058
18C_DC1911:DG1963_D-0.449-0.015-0.20814.255-9.205-7.194
111C_DC1915:DG1960_D0.1360.497-0.635-0.971.68413.748
114C_DC1918:DG1957_D-0.7230.3820.5460.260.5357.928
116C_DC1920:DG1955_D1.103-0.274-0.99311.468-21.808-6.376
119C_DC1923:DG1952_D-0.144-0.2670.3084.858-0.075-3.945
13C_DG1906:DC1968_D-1.2450.3350.292-8.455-14.88312.851
17C_DG1910:DC1964_D-0.788-0.3730.0449.927-8.694-8.682
19C_DG1912:DC1962_D-0.770.0140.85740.0732.908-24.354
110C_DG1914:DC1961_D0.080.223-0.293-15.598-13.262.883
112C_DG1916:DC1959_D0.6630.6730.68417.884-11.0071.282
113C_DG1917:DC1958_D0.4260.1070.05110.496-14.378-0.674
117C_DG1921:DC1954_D-0.063-0.0280.001-9.2512.581-0.928
15C_DT1908:DA1966_D1.672-0.1580.2683.815-10.0477.393
115C_DT1919:DA1956_D-0.0170.0520.2074.8516.546-0.858
118C_DT1922:DA1953_D-0.134-0.0480.391-3.6295.882-0.534

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.