1NNE: Base Pair Morphology Step Parameters

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NDB ID: PD0388 PDB ID: 1NNE

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	CC_DA1904DC1905:DG1969DT1970_DD	-1.05	0.303	3.104	-7.375	0.188	31.796	0.507	0.606	3.261	0.338	13.239	32.62
1	6	CC_DA1909DG1910:DC1964DT1965_DD	0.212	-0.371	3.102	-3.41	10.589	31.017	-2.335	-0.915	2.791	19.05	6.135	32.905
1	2	CC_DC1905DG1906:DC1968DG1969_DD	0.537	-0.397	3.657	-8.825	23.458	30.97	-3.533	-1.9	2.533	37.231	14.006	39.647
1	4	CC_DC1907DT1908:DA1966DG1967_DD	0.311	0.559	2.96	3.958	7.188	38.589	0.042	-0.028	3.028	10.729	-5.908	39.419
1	8	CC_DC1911DG1912:DC1962DG1963_DD	-0.71	0.088	3.018	-2.912	7.766	21.952	-2.261	0.818	2.943	19.521	7.32	23.449
1	10	CC_DC1915DG1916:DC1959DG1960_DD	-0.882	1.254	3.363	-2.076	-10.942	38.457	3.074	1.055	2.954	-16.202	3.074	39.979
1	13	CC_DC1918DT1919:DA1956DG1957_DD	-0.311	-0.64	3.077	3.825	8.48	34.829	-2.137	0.999	2.801	13.863	-6.253	36.013
1	15	CC_DC1920DG1921:DC1954DG1955_DD	-0.07	0.052	3.788	-10.167	15.664	31.015	-2.52	-1.578	3.311	26.499	17.199	36.084
1	3	CC_DG1906DC1907:DG1967DC1968_DD	-0.741	-0.049	3.509	-7.487	0.196	35.412	-0.11	0.038	3.586	0.318	12.142	36.17
1	7	CC_DG1910DC1911:DG1963DC1964_DD	0.02	0.469	3.188	3.261	3.313	34.254	0.287	0.461	3.206	5.593	-5.505	34.559
1	9	CC_DG1914DC1915:DG1960DC1961_DD	1.296	0.383	2.752	3.4	1.625	30.033	0.449	-1.887	2.894	3.12	-6.529	30.264
1	11	CC_DG1916DG1917:DC1958DC1959_DD	0.85	-0.109	3.51	11.436	5.65	35.687	-0.977	0.327	3.551	8.877	-17.968	37.828
1	12	CC_DG1917DC1918:DG1957DC1958_DD	1.594	-0.084	3.362	0.262	-3.272	34.429	0.379	-2.64	3.367	-5.513	-0.441	34.58
1	16	CC_DG1921DT1922:DA1953DC1954_DD	0.033	-0.428	3.28	-4.996	1.13	32.801	-0.939	-0.896	3.224	1.986	8.78	33.187
1	5	CC_DT1908DA1909:DT1965DA1966_DD	-0.86	1.546	3.545	3.862	-5.886	33.02	3.647	2.126	3.114	-10.211	-6.7	33.741
1	14	CC_DT1919DC1920:DG1955DA1956_DD	-0.225	-0.12	3.02	10.656	2.5	36.371	-0.477	1.593	2.831	3.898	-16.614	37.928
1	17	CC_DT1922DC1923:DG1952DA1953_DD	-1.155	-0.21	3.118	-0.074	9.204	33.85	-1.659	1.907	2.964	15.455	0.125	35.044

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.