1NUV: Base Pair Morphology Parameters

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NDB ID: UR0030 PDB ID: 1NUV

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A21:U47_B	0.366	-0.186	-0.033	2.268	-19.191	-1.097
1	6	A_A25:A25_G	-1.509	-1.209	-0.006	7.519	-15.108	179.988
1	13	A_A29:U41_B	0.072	-0.082	0.194	-1.246	-16.301	2.956
1	4	A_C22:G46_B	0.475	-0.097	0.21	-6.118	-22.737	3.893
1	5	A_C23:A45_B	4.794	-0.627	0.556	-21.388	-11.018	5.56
1	11	A_C27:G43_B	0.359	-0.186	0.169	-0.321	-14.633	-0.623
1	12	A_C28:G42_B	0.189	-0.129	0.366	-6.666	-10.871	-0.374
1	1	A_G19:C49_B	-0.155	-0.142	0.059	-1.736	-14.887	0.97
1	2	A_G20:C48_B	-0.363	-0.139	0.06	1.311	-13.933	0.047
1	7	A_G24:G24_G	1.301	1.494	0.023	-13.287	18.027	-179.281
1	14	A_G30:C40_B	-0.301	-0.199	0.002	-3.408	-17.575	-1.901
1	17	C_A21:U47_D	0.092	-0.101	0.023	-1.268	-17.727	0.077
1	9	C_A25:A25_E	-6.146	5.076	0.051	4.35	19.407	-179.313
1	22	C_A29:U41_D	0.006	-0.145	0.188	5.594	-13.929	6.261
1	18	C_C22:G46_D	0.43	-0.184	0.081	-5.856	-24.796	0.951
1	19	C_C23:A45_D	3.836	-0.376	0.564	-22.998	-16.505	0.067
1	20	C_C27:G43_D	0.134	-0.093	-0.134	3.223	-6.271	1.854
1	21	C_C28:G42_D	0.212	-0.151	0.001	1.786	-7.969	2.981
1	15	C_G19:C49_D	-0.165	0.011	-0.175	-11.237	-8.407	1.856
1	16	C_G20:C48_D	-0.212	-0.137	-0.123	-3.873	-8.811	-0.975
1	8	C_G24:G24_E	-3.111	-8.255	-0.009	-25.246	-4.72	-179.627
1	10	C_G26:G26_E	-1.081	-1.457	-0.029	11.228	-16.469	179.438
1	23	C_G30:C40_D	-0.403	-0.24	0.138	4.739	-13.015	1.393
1	26	E_A21:U47_F	0.151	-0.105	0.019	-0.476	-18.693	0.226
1	31	E_A29:U41_F	-0.105	-0.091	0.185	3.718	-14.14	7.217
1	27	E_C22:G46_F	0.411	-0.198	0.122	-6.891	-23.422	0.917
1	28	E_C23:A45_F	4.11	-0.392	0.563	-23.674	-14.816	0.324
1	29	E_C27:G43_F	0.194	-0.077	0.039	-0.347	-4.416	2.475
1	30	E_C28:G42_F	0.205	-0.123	-0.094	2.959	-11.152	3.327
1	24	E_G19:C49_F	-0.153	-0.004	-0.223	-11.551	-8.404	2.639
1	25	E_G20:C48_F	-0.309	-0.139	-0.162	-3.427	-8.394	-0.854
1	32	E_G30:C40_F	-0.446	-0.186	0.203	4.309	-11.363	1.244
1	35	G_A21:U47_H	0.278	-0.137	-0.046	4.179	-19.215	-0.333
1	40	G_A29:U41_H	0.081	-0.109	0.178	-1.037	-16.528	2.548
1	36	G_C22:G46_H	0.269	-0.008	0.237	-7.224	-21.868	3.479
1	37	G_C23:A45_H	4.726	-0.606	0.686	-20.754	-11.103	5.795
1	38	G_C27:G43_H	0.299	-0.178	0.248	-1.691	-14.106	-1.197
1	39	G_C28:G42_H	0.292	-0.076	0.241	-3.374	-13.11	0.319
1	33	G_G19:C49_H	-0.21	-0.061	0.063	-3.064	-14.315	2.677
1	34	G_G20:C48_H	-0.387	-0.101	0.154	1.844	-12.264	0.059
1	41	G_G30:C40_H	-0.257	-0.177	-0.005	-3.045	-15.393	-2.186

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.