A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 1NYB  PDB ID: 1NYB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_A6:U19_B0.130.062-0.035-1.547-9.052.999
15B_C5:G20_B0.306-0.0870.1335.621-12.139-1.244
17B_C7:G18_B0.381-0.0840.075-3.927-4.9890.254
18B_C8:G17_B0.298-0.088-0.0548.441-16.713-0.825
110B_C10:C15_B3.984-1.799-0.7633.5848.155-24.184
11B_G1:C24_B-0.841-0.2160.0992.292-11.2091.542
12B_G2:C23_B-0.521-0.032-0.039-6.7-19.6475.231
13B_U3:G22_B2.24-0.2990.319-10.611-15.2245.219
14B_U4:A21_B-0.0890.0750.274-4.574-11.1822.219
19B_U9:G16_B2.17-0.470.279-0.258-16.813-3.515

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.