1NYB: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 1NYB PDB ID: 1NYB

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	BB_A6C7:G18U19_BB	-0.282	-2.474	3.365	-1.36	0.727	27.87	-5.306	0.253	3.31	1.509	2.821	27.912
1	5	BB_C5A6:U19G20_BB	0.394	-1.787	3.377	0.615	3.845	31.414	-3.989	-0.609	3.149	7.067	-1.131	31.648
1	7	BB_C7C8:G17G18_BB	-0.421	-2.622	3.247	4.088	-1.722	23.968	-5.667	2.29	3.307	-4.101	-9.738	24.369
1	8	BB_C8U9:G16G17_BB	0.417	-2.117	3.51	-0.911	6.676	36.081	-4.29	-0.789	3.071	10.663	1.456	36.684
1	1	BB_G1G2:C23C24_BB	0.082	-1.627	3.378	1.143	7.925	31.171	-4.317	0.051	2.889	14.452	-2.084	32.158
1	2	BB_G2U3:G22C23_BB	0.252	-1.036	3.26	0.592	3.18	45.767	-1.601	-0.272	3.187	4.083	-0.76	45.875
1	3	BB_U3U4:A21G22_BB	-0.301	-2.111	2.746	4.38	6.639	19.787	-7.69	2.121	1.84	18.389	-12.132	21.311
1	4	BB_U4C5:G20A21_BB	-0.044	-1.813	2.935	-0.589	1.258	26.344	-4.269	-0.042	2.847	2.757	1.292	26.38
1	9	BB_U9C10:C15G16_BB	-2.721	-2.474	3.424	7.447	6.875	32.486	-5.201	5.705	2.21	11.932	-12.925	33.989

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.