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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
PR0096
PDB ID:
1O0C
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
6
BB_A907C949:G965U966_BB
-0.337
-1.724
3.305
4.714
0.971
40.868
-2.558
0.99
3.209
1.385
-6.723
41.138
1
16
BB_A913A914:U908A922_BB
-0.528
-2.811
3.066
0.789
-7.275
46.389
-2.928
0.728
3.436
-9.169
-0.995
46.931
1
17
BB_A914G915:C948U908_BB
1.903
-2.614
3.181
1.143
18.124
-73.054
1.559
1.601
3.63
-15.0
0.946
-74.971
1
22
BB_A931U932:U938U939_BB
-1.587
-1.672
3.319
2.565
5.064
45.986
-2.545
2.23
3.041
6.452
-3.269
46.316
1
9
BB_A951G952:C962U963_BB
0.247
-1.831
3.406
6.082
4.328
30.369
-4.228
0.707
3.112
8.108
-11.394
31.252
1
14
BB_C911C912:G923G924_BB
0.491
-2.143
3.335
6.299
4.576
29.786
-4.924
0.293
3.018
8.717
-11.998
30.765
1
15
BB_C912A913:A922G923_BB
-0.356
-1.478
3.407
3.369
7.778
53.242
-2.119
0.604
3.153
8.617
-3.733
53.863
1
18
BB_C927C928:G942G943_BB
-0.303
-2.022
3.159
0.022
10.837
31.436
-5.114
0.534
2.352
19.298
-0.04
33.207
1
19
BB_C928G929:C941G942_BB
-0.194
-1.953
3.499
-0.176
11.056
29.781
-5.539
0.324
2.626
20.637
0.328
31.724
1
7
BB_C949G950:C964G965_BB
-0.48
-2.191
3.671
1.226
7.235
26.933
-6.328
1.298
2.968
15.18
-2.571
27.897
1
1
BB_G902G903:C970C971_BB
0.38
-1.752
3.198
-0.82
5.895
34.486
-3.744
-0.747
2.859
9.853
1.37
34.98
1
2
BB_G903G904:C969C970_BB
0.241
-1.959
3.459
-0.857
2.396
31.705
-4.027
-0.602
3.299
4.376
1.566
31.805
1
3
BB_G904G905:C968C969_BB
0.937
-2.351
3.422
9.344
9.648
27.405
-6.359
0.041
2.637
18.987
-18.389
30.463
1
4
BB_G905U906:A967C968_BB
0.173
-1.233
3.359
0.409
5.86
34.026
-2.983
-0.229
3.112
9.921
-0.693
34.514
1
13
BB_G910C911:G924C925_BB
-0.458
-1.879
3.136
-2.925
1.434
35.852
-3.234
0.344
3.087
2.323
4.739
35.995
1
20
BB_G929G930:C940C941_BB
1.107
-1.631
3.177
-2.541
11.582
24.67
-5.893
-2.879
2.091
25.322
5.555
27.332
1
21
BB_G930A931:U939C940_BB
-1.041
-1.607
3.643
2.046
2.862
38.927
-2.777
1.824
3.464
4.285
-3.062
39.08
1
8
BB_G950A951:U963C964_BB
0.051
-0.941
3.082
-2.357
3.572
31.313
-2.34
-0.498
2.948
6.578
4.342
31.597
1
10
BB_G952G953:C961C962_BB
1.214
-2.121
3.284
1.729
5.55
33.047
-4.551
-1.831
2.957
9.665
-3.01
33.54
1
11
BB_G953U954:A958C961_BB
-2.15
-2.023
2.867
0.334
1.832
84.423
-1.542
1.606
2.824
1.364
-0.249
84.44
1
5
BB_U906A907:U966A967_BB
0.143
-1.706
2.658
1.497
4.714
30.192
-3.957
-0.042
2.375
8.975
-2.85
30.585
1
23
BB_U932U933:A937U938_BB
-0.082
-2.18
3.061
10.255
2.686
47.954
-2.812
0.809
2.869
3.259
-12.441
49.045
1
12
BB_U954U955:G918A958_BB
1.364
-1.807
3.469
9.789
1.774
51.503
-2.174
-0.843
3.595
2.02
-11.146
52.391
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.