1O0C: Base Pair Morphology Step Parameters

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As of 23-Nov-2022 number of released structures: 12471

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NDB ID: PR0096 PDB ID: 1O0C

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	BB_A907C949:G965U966_BB	-0.337	-1.724	3.305	4.714	0.971	40.868	-2.558	0.99	3.209	1.385	-6.723	41.138
1	16	BB_A913A914:U908A922_BB	-0.528	-2.811	3.066	0.789	-7.275	46.389	-2.928	0.728	3.436	-9.169	-0.995	46.931
1	17	BB_A914G915:C948U908_BB	1.903	-2.614	3.181	1.143	18.124	-73.054	1.559	1.601	3.63	-15.0	0.946	-74.971
1	22	BB_A931U932:U938U939_BB	-1.587	-1.672	3.319	2.565	5.064	45.986	-2.545	2.23	3.041	6.452	-3.269	46.316
1	9	BB_A951G952:C962U963_BB	0.247	-1.831	3.406	6.082	4.328	30.369	-4.228	0.707	3.112	8.108	-11.394	31.252
1	14	BB_C911C912:G923G924_BB	0.491	-2.143	3.335	6.299	4.576	29.786	-4.924	0.293	3.018	8.717	-11.998	30.765
1	15	BB_C912A913:A922G923_BB	-0.356	-1.478	3.407	3.369	7.778	53.242	-2.119	0.604	3.153	8.617	-3.733	53.863
1	18	BB_C927C928:G942G943_BB	-0.303	-2.022	3.159	0.022	10.837	31.436	-5.114	0.534	2.352	19.298	-0.04	33.207
1	19	BB_C928G929:C941G942_BB	-0.194	-1.953	3.499	-0.176	11.056	29.781	-5.539	0.324	2.626	20.637	0.328	31.724
1	7	BB_C949G950:C964G965_BB	-0.48	-2.191	3.671	1.226	7.235	26.933	-6.328	1.298	2.968	15.18	-2.571	27.897
1	1	BB_G902G903:C970C971_BB	0.38	-1.752	3.198	-0.82	5.895	34.486	-3.744	-0.747	2.859	9.853	1.37	34.98
1	2	BB_G903G904:C969C970_BB	0.241	-1.959	3.459	-0.857	2.396	31.705	-4.027	-0.602	3.299	4.376	1.566	31.805
1	3	BB_G904G905:C968C969_BB	0.937	-2.351	3.422	9.344	9.648	27.405	-6.359	0.041	2.637	18.987	-18.389	30.463
1	4	BB_G905U906:A967C968_BB	0.173	-1.233	3.359	0.409	5.86	34.026	-2.983	-0.229	3.112	9.921	-0.693	34.514
1	13	BB_G910C911:G924C925_BB	-0.458	-1.879	3.136	-2.925	1.434	35.852	-3.234	0.344	3.087	2.323	4.739	35.995
1	20	BB_G929G930:C940C941_BB	1.107	-1.631	3.177	-2.541	11.582	24.67	-5.893	-2.879	2.091	25.322	5.555	27.332
1	21	BB_G930A931:U939C940_BB	-1.041	-1.607	3.643	2.046	2.862	38.927	-2.777	1.824	3.464	4.285	-3.062	39.08
1	8	BB_G950A951:U963C964_BB	0.051	-0.941	3.082	-2.357	3.572	31.313	-2.34	-0.498	2.948	6.578	4.342	31.597
1	10	BB_G952G953:C961C962_BB	1.214	-2.121	3.284	1.729	5.55	33.047	-4.551	-1.831	2.957	9.665	-3.01	33.54
1	11	BB_G953U954:A958C961_BB	-2.15	-2.023	2.867	0.334	1.832	84.423	-1.542	1.606	2.824	1.364	-0.249	84.44
1	5	BB_U906A907:U966A967_BB	0.143	-1.706	2.658	1.497	4.714	30.192	-3.957	-0.042	2.375	8.975	-2.85	30.585
1	23	BB_U932U933:A937U938_BB	-0.082	-2.18	3.061	10.255	2.686	47.954	-2.812	0.809	2.869	3.259	-12.441	49.045
1	12	BB_U954U955:G918A958_BB	1.364	-1.807	3.469	9.789	1.774	51.503	-2.174	-0.843	3.595	2.02	-11.146	52.391

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.