1OB2: Base Pair Morphology Parameters

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NDB ID: PR0199 PDB ID: 1OB2

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	22	B_2MG10:C25_B	-1.279	-0.243	-0.254	-12.106	-10.135	1.478
1	17	B_5MC40:G30_B	0.324	0.648	-0.795	7.958	-20.08	3.162
1	8	B_5MC49:G65_B	-0.021	-0.268	0.03	9.935	-6.733	-0.206
1	5	B_A5:U68_B	0.072	-0.271	-0.266	-6.055	-17.509	-6.464
1	26	B_A14:U8_B	-4.286	-1.966	1.143	21.574	36.908	-98.375
1	15	B_A38:OMC32_B	-3.54	-0.569	1.152	9.43	2.184	-14.176
1	21	B_A44:M2G26_B	1.109	1.808	-0.398	-26.065	-29.802	-13.364
1	2	B_C2:G71_B	0.183	0.027	-0.432	2.186	-8.946	3.511
1	23	B_C11:G24_B	0.079	0.004	0.165	-19.899	-9.588	4.318
1	25	B_C13:G22_B	0.834	-0.151	0.789	-7.122	-0.439	3.281
1	1	B_G1:C72_B	0.273	-0.205	0.305	3.566	-5.826	-3.184
1	3	B_G3:C70_B	-0.357	-0.031	0.125	-3.082	-12.805	7.037
1	4	B_G4:U69_B	-1.973	-0.65	-0.136	-2.37	-6.762	-6.511
1	27	B_G15:C48_B	0.102	3.768	0.016	-3.132	-4.892	156.586
1	29	B_G19:C56_B	0.128	-0.224	0.394	-7.466	-17.935	-5.544
1	19	B_G42:C28_B	1.202	0.309	-0.333	-17.978	-7.305	3.587
1	20	B_G43:C27_B	0.358	0.128	-0.556	-16.042	-22.583	-10.991
1	10	B_G51:C63_B	-0.441	-0.286	0.434	4.039	-15.246	-1.291
1	12	B_G53:C61_B	0.607	0.031	0.042	-13.777	-4.515	-6.391
1	28	B_H2U16:U59_B	1.911	2.641	-1.01	-5.606	32.907	176.839
1	16	B_PSU39:A31_B	0.325	0.653	-0.254	16.303	0.429	14.64
1	14	B_PSU55:G18_B	0.007	-5.61	0.802	15.518	11.375	-103.758
1	6	B_U6:A67_B	-0.499	-0.237	-0.334	3.339	-18.959	2.014
1	7	B_U7:A66_B	0.478	0.128	0.092	3.326	-2.353	0.492
1	24	B_U12:A23_B	0.835	-0.005	0.593	-23.74	8.187	2.287
1	18	B_U41:A29_B	0.868	-0.143	-0.488	-7.492	-6.486	-0.307
1	9	B_U50:A64_B	-0.591	-0.175	-0.364	16.014	-17.633	-1.687
1	11	B_U52:A62_B	0.027	-0.442	0.369	-3.165	-19.693	0.562
1	13	B_U54:1MA58_B	4.609	-2.75	0.102	1.89	2.06	-97.501

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.