1OB2: Base Pair Morphology Step Parameters

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NDB ID: PR0199 PDB ID: 1OB2

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	21	BB_2MG10C11:G24C25_BB	-0.492	-1.364	3.358	-3.847	7.902	41.897	-2.659	0.291	3.094	10.906	5.31	42.768
1	16	BB_5MC40U41:A29G30_BB	0.173	-1.116	3.805	-5.693	10.287	35.223	-3.292	-1.123	3.295	16.444	9.1	37.074
1	8	BB_5MC49U50:A64G65_BB	-0.68	-2.817	2.979	1.808	8.159	26.416	-7.424	1.762	1.986	17.311	-3.837	27.684
1	5	BB_A5U6:A67U68_BB	0.074	-1.433	3.021	3.147	7.6	27.827	-4.317	0.456	2.541	15.382	-6.369	28.994
1	25	BB_A14G15:C48U8_BB	1.906	-4.116	3.713	-3.665	12.187	-62.513	3.23	1.605	4.459	-11.616	-3.493	-63.666
1	14	BB_A38PSU39:A31OMC32_BB	1.878	-0.834	3.257	1.227	17.265	40.426	-2.694	-2.404	2.751	23.715	-1.686	43.832
1	20	BB_A442MG10:C25M2G26_BB	-2.647	-2.743	3.572	19.775	11.285	50.658	-3.543	3.879	1.889	12.492	-21.89	55.23
1	2	BB_C2G3:C70G71_BB	0.242	-2.035	3.374	-2.122	11.88	22.88	-7.471	-1.061	2.051	27.618	4.932	25.83
1	22	BB_C11U12:A23G24_BB	-0.295	-1.401	3.268	-0.508	8.522	36.946	-3.2	0.392	2.89	13.231	0.789	37.886
1	24	BB_C13A14:U8G22_BB	-2.02	-0.437	2.726	0.72	-9.085	56.285	-0.037	2.152	2.737	-9.56	-0.758	56.959
1	1	BB_G1C2:G71C72_BB	-0.086	-2.54	3.483	6.809	-2.722	28.492	-4.363	1.773	3.588	-5.418	-13.553	29.401
1	3	BB_G3G4:U69C70_BB	-0.581	-2.104	3.097	-4.37	8.659	28.658	-5.562	0.344	2.433	16.893	8.527	30.223
1	4	BB_G4A5:U68U69_BB	-0.662	-1.521	3.476	-1.01	4.695	36.227	-3.099	0.912	3.277	7.51	1.616	36.533
1	26	BB_G15H2U16:U59C48_BB	-0.214	-1.193	2.563	12.96	12.852	-4.098	-3.422	6.495	1.532	-54.536	54.997	-18.703
1	18	BB_G42G43:C27C28_BB	-0.158	-1.604	3.065	4.517	13.28	37.292	-3.68	0.682	2.348	19.925	-6.778	39.755
1	19	BB_G43A44:M2G26C27_BB	-0.682	-1.636	3.401	5.78	-4.966	39.872	-1.776	1.664	3.444	-7.203	-8.383	40.565
1	10	BB_G51U52:A62C63_BB	0.206	-1.348	3.293	-0.882	0.631	35.061	-2.332	-0.474	3.263	1.046	1.463	35.078
1	12	BB_G53U54:1MA58C61_BB	-1.532	-1.724	3.082	0.881	-3.442	86.958	-1.181	1.131	3.123	-2.5	-0.64	87.016
1	15	BB_PSU395MC40:G30A31_BB	-1.103	-2.004	3.121	2.154	14.053	31.889	-5.103	2.112	2.01	24.134	-3.699	34.839
1	6	BB_U6U7:A66A67_BB	0.41	-0.894	3.47	-2.755	12.653	35.573	-3.034	-0.993	2.955	19.914	4.336	37.784
1	7	BB_U75MC49:G65A66_BB	-0.065	-2.444	2.987	1.98	2.814	30.916	-5.032	0.454	2.749	5.259	-3.7	31.102
1	23	BB_U12C13:G22A23_BB	1.484	-2.011	2.742	2.789	6.399	25.813	-5.665	-2.638	2.329	14.0	-6.103	26.725
1	17	BB_U41G42:C28A29_BB	0.09	-1.929	3.729	-0.946	5.232	27.407	-5.352	-0.431	3.306	10.913	1.973	27.909
1	9	BB_U50G51:C63A64_BB	-0.444	-1.979	3.457	-9.123	12.239	31.149	-5.158	-0.619	2.552	21.267	15.851	34.605
1	11	BB_U52G53:C61A62_BB	-0.488	-1.502	3.453	0.513	3.01	43.825	-2.305	0.703	3.342	4.027	-0.687	43.926
1	13	BB_U54PSU55:G181MA58_BB	1.87	-2.178	3.607	13.302	6.611	39.293	-3.835	-1.025	3.632	9.432	-18.978	41.903

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.