A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: NA0259  PDB ID: 1OE4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16E_DA287:DT298_F-0.473-0.035-0.251-8.355-4.6862.884
11E_DC281:DG304_F0.1-0.2430.383-13.682-13.576-5.427
12E_DC282:DG303_F0.026-0.033-0.063-5.045-12.589-9.25
13E_DC283:DG302_F0.723-0.0380.202-6.604-11.2610.294
19E_DC290:DG295_F0.404-0.1270.0520.42-6.98-0.858
110E_DC291:DG294_F0.427-0.13-0.18516.6230.5932.053
14E_DG284:DC301_F-0.218-0.2660.272.244-2.87-2.497
17E_DG288:DC297_F-0.457-0.067-0.074-2.633-7.0390.96
15E_DT285:DA300_F0.123-0.20.4962.643-3.5416.839
18E_DT289:DA296_F0.006-0.17-0.0821.309-7.421-1.391

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.