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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA0259
PDB ID:
1OE4
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
E_DA287:DT298_F
-0.473
-0.035
-0.251
-8.355
-4.686
2.884
1
1
E_DC281:DG304_F
0.1
-0.243
0.383
-13.682
-13.576
-5.427
1
2
E_DC282:DG303_F
0.026
-0.033
-0.063
-5.045
-12.589
-9.25
1
3
E_DC283:DG302_F
0.723
-0.038
0.202
-6.604
-11.261
0.294
1
9
E_DC290:DG295_F
0.404
-0.127
0.052
0.42
-6.98
-0.858
1
10
E_DC291:DG294_F
0.427
-0.13
-0.185
16.623
0.593
2.053
1
4
E_DG284:DC301_F
-0.218
-0.266
0.27
2.244
-2.87
-2.497
1
7
E_DG288:DC297_F
-0.457
-0.067
-0.074
-2.633
-7.039
0.96
1
5
E_DT285:DA300_F
0.123
-0.2
0.496
2.643
-3.541
6.839
1
8
E_DT289:DA296_F
0.006
-0.17
-0.082
1.309
-7.421
-1.391
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.