1OE4: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA0259 PDB ID: 1OE4

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	E_DA287:DT298_F	-0.473	-0.035	-0.251	-8.355	-4.686	2.884
1	1	E_DC281:DG304_F	0.1	-0.243	0.383	-13.682	-13.576	-5.427
1	2	E_DC282:DG303_F	0.026	-0.033	-0.063	-5.045	-12.589	-9.25
1	3	E_DC283:DG302_F	0.723	-0.038	0.202	-6.604	-11.261	0.294
1	9	E_DC290:DG295_F	0.404	-0.127	0.052	0.42	-6.98	-0.858
1	10	E_DC291:DG294_F	0.427	-0.13	-0.185	16.623	0.593	2.053
1	4	E_DG284:DC301_F	-0.218	-0.266	0.27	2.244	-2.87	-2.497
1	7	E_DG288:DC297_F	-0.457	-0.067	-0.074	-2.633	-7.039	0.96
1	5	E_DT285:DA300_F	0.123	-0.2	0.496	2.643	-3.541	6.839
1	8	E_DT289:DA296_F	0.006	-0.17	-0.082	1.309	-7.421	-1.391

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.