1OE4: Base Pair Morphology Step Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA0259 PDB ID: 1OE4

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	EE_DA287DG288:DC297DT298_FF	-1.363	0.205	3.163	-6.437	10.425	32.461	-1.289	1.28	3.277	17.873	11.037	34.638
1	1	EE_DC281DC282:DG303DG304_FF	-0.503	-0.325	3.143	3.992	3.79	33.624	-1.126	1.461	3.012	6.497	-6.844	34.059
1	2	EE_DC282DC283:DG302DG303_FF	0.928	0.203	3.458	0.213	0.928	38.197	0.186	-1.389	3.467	1.418	-0.326	38.208
1	3	EE_DC283DG284:DC301DG302_FF	0.247	0.882	3.195	-0.899	1.615	35.661	1.21	-0.531	3.224	2.635	1.466	35.707
1	9	EE_DC290DC291:DG294DG295_FF	0.808	-0.11	3.061	2.916	3.809	30.609	-0.901	-0.982	3.087	7.16	-5.481	30.974
1	4	EE_DG284DT285:DA300DC301_FF	0.139	-0.275	3.384	-1.517	4.44	26.244	-1.789	-0.708	3.28	9.679	3.308	26.653
1	7	EE_DG288DT289:DA296DC297_FF	-0.12	-0.433	3.292	0.646	3.749	30.01	-1.588	0.361	3.213	7.203	-1.24	30.244
1	5	EE_DT285DA287:DT298DA300_FF	0.436	0.299	7.198	11.279	9.633	77.132	-0.358	0.352	7.19	7.659	-8.968	78.326
1	8	EE_DT289DC290:DG295DA296_FF	0.255	-0.082	3.356	1.153	4.777	34.683	-0.873	-0.246	3.322	7.963	-1.921	35.019

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.