A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 1OKA  PDB ID: 1OKA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_DA3:DT7_B0.63-0.019-0.22.331-4.2620.646
12A_DC2:DG8_B0.974-0.3190.253-10.8655.468-1.18
17A_DG7:C3_B-0.101-0.0210.0411.735-9.409-0.502
18A_DG8:C2_B0.245-0.0390.1883.14-11.145-2.876
19A_DG9:C1_B-0.487-0.128-0.072-3.15-13.605-1.97
11A_DT1:DA9_B0.426-0.152-0.374-10.094-4.5950.068
14A_DT4:DA6_B-0.013-0.034-0.3610.902-6.724-2.875
15A_DT5:DA5_B-0.5430.0210.1743.397-2.3180.367
16A_DT6:A4_B0.271-0.099-0.4517.604-16.9692.648

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.