A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID: PD0404  PDB ID: 1OUQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA102:DT135_D-0.113-0.2040.9160.452-13.027-7.251
14C_DA104:DT133_D0.505-0.0770.3995.554-19.218-6.054
15C_DA105:DT132_D0.5850.1351.0464.797-12.1082.437
112C_DA112:DT125_D0.208-0.187-0.026-2.034-10.805-0.697
114C_DA114:DT123_D0.432-0.204-0.123-1.63-2.3580.124
16C_DC106:DG131_D0.121-0.1450.83-4.033-23.791-0.804
19C_DC109:DG128_D-0.2950.037-0.087-6.805-11.034-2.604
11C_DG101:DC136_D-0.35-0.141-0.333-7.176-27.406-2.538
110C_DG110:DC127_D-0.454-0.189-0.237-4.9856.265-5.167
13C_DT103:DA134_D0.1870.0050.8-1.434-11.3694.882
18C_DT108:DA129_D-0.9950.0550.167-7.461-16.1646.507
111C_DT111:DA126_D0.743-0.210.076.8480.2859.841
113C_DT113:DA124_D-0.908-0.1060.3914.273.6145.907
17C_UMP107:DA130_D0.493-0.0191.204-20.342-12.44.496
118X_DA119:DT118_D1.809-0.016-1.905-25.00611.7068.493
123X_DA124:DT113_D0.165-0.0550.127-8.186.5858.384
125X_DA126:DT111_D0.5030.141-0.354-15.732-5.5135.036
128X_DA129:DT108_D0.360.01-0.4754.512-11.1535.923
129X_DA130:DT107_D-0.205-0.1010.1557.376-14.5771.644
133X_DA134:DT103_D-0.076-0.0760.514-1.276-5.573-3.733
121X_DC122:DG115_D-0.3320.0330.355-3.718-7.2110.304
126X_DC127:DG110_D0.752-0.058-0.3726.9251.7890.868
135X_DC136:DG101_D0.1640.0470.1130.201-26.818-1.471
116X_DG117:DC120_D-1.066-0.7450.5544.916-16.783-3.17
120X_DG121:DC116_D-0.456-0.2580.7088.487-9.9330.105
127X_DG128:DC109_D-0.4570.2740.25210.091-7.74212.257
130X_DG131:DC106_D-1.0960.0660.4381.644-22.261.977
115X_DT116:DA121_D-0.5920.08-0.0245.301-11.319-0.796
117X_DT118:DA119_D-0.3110.101-0.817-5.34-7.13114.77
119X_DT120:DA117_D-1.3760.2580.749-2.269-15.9072.057
122X_DT123:DA114_D-0.135-0.2240.1993.3236.349-2.685
124X_DT125:DA112_D-0.166-0.1020.412-1.2660.939-7.26
131X_DT132:DA105_D-0.425-0.0080.609-7.536-9.024-0.555
132X_DT133:DA104_D-0.7360.1510.255-0.111-16.876-0.328
134X_DT135:DA102_D-0.8590.1720.2887.095-13.72910.4
150G_A3P115:DT122_H0.4720.1180.524-5.31-4.427-0.376
137G_DA102:DT135_H-0.4320.1040.657-0.524-17.3625.729
139G_DA104:DT133_H0.6360.123-0.222-5.901-16.6810.829
140G_DA105:DT132_H0.4720.0470.3914.806-9.952-9.116
147G_DA112:DT125_H0.210.058-0.278-6.191-9.543-3.788
149G_DA114:DT123_H0.8650.15-0.47-13.8522.1672.341
141G_DC106:DG131_H0.381-0.3970.6452.517-18.443-1.717
144G_DC109:DG128_H0.0950.0370.251-10.396-5.039-1.173
136G_DG101:DC136_H-0.3-0.434-0.087-1.506-22.797-9.191
145G_DG110:DC127_H-0.622-0.0060.175-0.1851.321-3.781
138G_DT103:DA134_H0.0760.2570.0594.832-14.217-0.452
143G_DT108:DA129_H-0.9220.1690.442-17.937-17.0969.074
146G_DT111:DA126_H0.215-0.0120.1084.46-1.94712.365
148G_DT113:DA124_H-0.1840.0690.1431.6511.0971.56
142G_UMP107:DA130_H-0.3740.1611.288-15.774-12.2286.114
154Y_DA119:DT118_H-0.836-0.564-0.558-12.486-18.911-14.149
159Y_DA124:DT113_H-0.27-0.1340.1821.1123.2487.768
161Y_DA126:DT111_H0.1790.0130.034-5.54-4.8274.336
164Y_DA129:DT108_H0.171-0.206-0.25310.516-13.735-5.43
165Y_DA130:DT107_H0.1520.0340.61811.655-19.986-2.37
169Y_DA134:DT103_H0.5760.1530.184-6.949-17.1771.655
157Y_DC122:DG115_H-0.7870.1240.355-3.223-10.4652.669
162Y_DC127:DG110_H-0.248-0.056-0.4079.263-2.0044.747
171Y_DC136:DG101_H-0.2340.5230.195-7.933-14.5544.293
152Y_DG117:DC120_H-1.539-0.6160.37515.02110.497-15.768
156Y_DG121:DC116_H-0.1510.1450.073-2.714-9.1985.618
163Y_DG128:DC109_H1.179-0.061-0.1610.702-12.4173.593
166Y_DG131:DC106_H-1.2960.0820.9063.431-22.7586.36
151Y_DT116:DA121_H-0.554-0.287-0.3647.769-9.8424.825
153Y_DT118:DA119_H0.924-0.641-0.45613.15610.113-17.461
155Y_DT120:DA117_H0.241-0.444-0.928.944-15.1472.287
158Y_DT123:DA114_H-0.039-0.1410.1029.0980.4165.464
160Y_DT125:DA112_H-0.1450.0740.0613.298-10.707-7.673
167Y_DT132:DA105_H0.5010.0890.629-7.512-10.49610.694
168Y_DT133:DA104_H-0.257-0.0010.151-3.139-27.493-5.502
170Y_DT135:DA102_H-0.1230.287-0.4742.799-19.792-4.012

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.