A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID: PD0404  PDB ID: 1OUQ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_DA102DT103:DA134DT135_DD1.241-1.2023.2645.05-2.43937.425-1.53-1.2423.464-3.775-7.81637.828
14CC_DA104DA105:DT132DT133_DD1.104-0.4463.139-1.0975.61933.491-1.612-2.0562.9919.6631.88633.963
15CC_DA105DC106:DG131DT132_DD0.231-1.8293.644-0.4781.80122.589-5.365-0.7773.4844.5871.21922.664
112CC_DA112DT113:DA124DT125_DD0.908-1.463.253-4.539-3.54523.028-2.377-3.7133.203-8.70611.14723.728
114CX_DA114DT116:DA121DT123_DD-0.846-1.7696.7722.023-1.10453.635-1.8171.1986.771-1.223-2.24153.681
16CC_DC106UMP107:DA130DG131_DD-0.354-0.7113.647-5.949-2.51541.365-0.699-0.2073.696-3.5348.3641.844
19CC_DC109DG110:DC127DG128_DD0.4670.8793.461.657.37434.2910.254-0.5053.58412.322-2.75735.09
11CC_DG101DA102:DT135DC136_DD-0.201-0.3362.879-10.975-4.23139.765-0.07-0.7672.854-6.06115.72241.401
110CC_DG110DT111:DA126DC127_DD0.6260.2273.1080.1120.85331.490.267-1.1333.1151.571-0.20631.501
13CC_DT103DA104:DT133DA134_DD-0.9440.813.1520.7740.44940.7421.1151.4383.1430.645-1.11140.752
18CC_DT108DC109:DG128DA129_DD-0.065-0.4073.2651.6111.65436.219-0.8840.3293.2382.658-2.58836.29
111CC_DT111DA112:DT125DA126_DD0.198-0.9023.4335.9369.19436.415-2.5870.473.11614.319-9.24437.97
113CC_DT113DA114:DT123DA124_DD-0.574-0.7643.3096.051-5.43646.884-0.5051.2063.279-6.772-7.53947.545
17CC_UMP107DT108:DA129DA130_DD-0.196-0.682.7167.584-2.5428.933-0.8791.6792.63-4.965-14.82429.996
118XX_DA119DT120:DA117DT118_DD1.315-0.4495.42919.038-14.6234.2598.2118.9612.251-48.784-63.51224.375
123XX_DA124DT125:DA112DT113_DD-1.122-1.1523.305-1.848-3.16227.743-1.6021.8653.477-6.5583.83327.979
125XX_DA126DC127:DG110DT111_DD0.040.2812.741-0.9364.05326.074-0.297-0.2982.7498.9112.05826.398
128XX_DA129DA130:DT107DT108_DD-0.168-0.2992.962-3.2652.25534.322-0.82-0.1742.9393.8055.5134.544
129XX_DA130DG131:DC106DT107_DD0.156-0.7973.304-5.8236.25136.588-2.046-0.9943.0719.7949.12337.538
133XX_DA134DT135:DA102DT103_DD-0.054-0.9653.0210.8280.53629.693-1.9850.2663.01.045-1.61529.709
121XX_DC122DT123:DA114DG115_DD-0.051-1.0213.2880.495-8.60134.985-0.3760.1563.434-14.045-0.80835.998
126XX_DC127DG128:DC109DG110_DD-0.1590.6753.385-5.1295.1527.3060.114-0.9373.42410.67110.62728.239
116XX_DG117DT118:DA119DC120_DD0.867-0.2453.49410.50310.25337.666-1.6260.0443.4315.193-15.56440.328
120XX_DG121DC122:DG115DC116_DD-0.456-0.5153.6450.993-1.53630.127-0.641.1013.649-2.951-1.90830.181
127XX_DG128DA129:DT108DC109_DD-0.087-0.2343.3924.4374.76434.797-1.1090.8163.2967.88-7.3435.382
130XX_DG131DT132:DA105DC106_DD-0.821-1.0833.454-0.643-2.68634.06-1.3891.2883.541-4.5771.09534.168
115XX_DT116DG117:DC120DA121_DD-0.4010.2143.932-5.54712.70427.36-2.69-0.5933.68124.93110.88730.612
117XX_DT118DA119:DT118DA119_DD0.5581.0724.1035.2953.76553.1060.889-0.1954.1984.194-5.89753.473
119XX_DT120DG121:DC116DA117_DD1.091.2123.4532.389-14.95650.9362.336-1.0653.055-16.965-2.7152.996
122XX_DT123DA124:DT113DA114_DD0.641-0.3133.5470.422-8.43743.2920.451-0.8113.55-11.308-0.56644.069
124XX_DT125DA126:DT111DA112_DD0.211-0.7223.64.1337.9245.945-1.6260.1083.44310.034-5.23646.759
131XX_DT132DT133:DA104DA105_DD-0.603-0.4053.0560.9684.97824.065-2.3591.692.88811.773-2.28824.586
132XX_DT133DA134:DT103DA104_DD0.3581.0173.4-3.7550.73346.111.23-0.7873.3770.9344.78546.26
134XX_DT135DC136:DG101DA102_DD-0.3870.2723.3570.017-4.74946.0330.760.4943.315-6.054-0.02246.264
149GY_A3P115DT116:DA121DT122_HH-0.579-0.8832.9127.857-2.95421.397-1.3033.8912.631-7.589-20.18822.967
136GG_DA102DT103:DA134DT135_HH0.097-0.733.1225.9381.92233.308-1.5470.7423.0483.316-10.24833.871
138GG_DA104DA105:DT132DT133_HH0.166-0.3483.027-3.1241.19926.325-1.049-1.1192.9692.6186.82526.533
139GG_DA105DC106:DG131DT132_HH0.916-1.6253.227-1.7014.85530.626-3.913-2.0192.8879.1113.19231.045
146GG_DA112DT113:DA124DT125_HH0.758-1.0373.229-3.3460.84130.383-2.128-2.083.1011.5976.35830.574
148GG_DA114A3P115:DT122DT123_HH-0.301-0.9983.178-7.564-0.84532.137-1.615-0.7383.189-1.50113.4333.003
140GG_DC106UMP107:DA130DG131_HH-0.128-1.123.662-3.9452.80333.743-2.405-0.4773.5514.7986.75334.079
143GG_DC109DG110:DC127DG128_HH0.1930.6993.2761.7922.76433.1030.754-0.0353.3274.836-3.13633.262
135GG_DG101DA102:DT135DC136_HH0.975-0.213.091-0.239-5.80440.7320.298-1.4123.085-8.2870.34141.126
144GG_DG110DT111:DA126DC127_HH0.425-0.013.3930.2027.00428.014-1.64-0.8073.29614.188-0.40928.86
137GG_DT103DA104:DT133DA134_HH-0.2250.9283.6471.7744.78345.2170.7240.4673.7116.197-2.29945.489
142GG_DT108DC109:DG128DA129_HH0.119-0.1332.9960.5977.15936.871-1.06-0.1132.92211.189-0.93237.541
145GG_DT111DA112:DT125DA126_HH-0.003-0.8133.5255.3723.07938.9-1.5970.6843.4234.587-8.00439.37
147GG_DT113DA114:DT123DA124_HH-0.722-0.6943.6713.698-4.57642.308-0.4371.4093.65-6.304-5.09442.696
141GG_UMP107DT108:DA129DA130_HH-0.28-0.7013.3176.437-7.59532.3810.0591.5533.28-13.234-11.21733.838
153YY_DA119DT120:DA117DT118_HH1.9771.3152.91216.039-1.81843.6221.822-1.1653.349-2.353-20.75746.376
158YY_DA124DT125:DA112DT113_HH-0.987-0.923.3850.093-1.21334.664-1.3491.6713.412-2.035-0.15634.685
160YY_DA126DC127:DG110DT111_HH0.081-0.0373.1112.4442.17720.323-1.0160.7993.0786.117-6.86920.582
163YY_DA129DA130:DT107DT108_HH0.066-0.6323.123-4.765-0.61636.958-0.911-0.7073.101-0.9677.47837.259
164YY_DA130DG131:DC106DT107_HH0.795-0.7443.215-3.2455.28133.411-2.08-1.8572.9789.0895.58533.966
168YY_DA134DT135:DA102DT103_HH-0.66-0.7092.9641.225-0.97529.324-1.2091.5412.956-1.925-2.41829.365
156YY_DC122DT123:DA114DG115_HH-0.04-0.8193.105-0.277-6.27239.373-0.4990.0273.193-9.2370.40839.851
161YY_DC127DG128:DC109DG110_HH-0.8171.6813.673-2.88.92746.0711.2410.7523.95611.273.53546.961
151YY_DG117DT118:DA119DC120_HH-1.3090.4494.2264.68130.85239.382-2.5032.0143.52739.202-5.94749.858
155YY_DG121DC122:DG115DC116_HH-0.513-0.2423.428-2.854-2.27427.9270.0670.3483.47-4.6865.88128.16
162YY_DG128DA129:DT108DC109_HH-0.054-1.2453.091-0.5945.12121.61-4.975-0.0632.72613.4151.55622.209
165YY_DG131DT132:DA105DC106_HH-0.585-0.9533.7232.482-2.26439.255-1.1081.2033.727-3.363-3.68739.393
150YY_DT116DG117:DC120DA121_HH-1.420.5844.238-4.02234.33515.634-5.6551.4222.45565.9397.72537.842
152YY_DT118DA119:DT118DA119_HH-0.282.8014.207-1.794-11.14334.3126.3550.1583.182-18.2852.94436.068
154YY_DT120DG121:DC116DA117_HH0.8161.6583.918-10.4840.63341.9032.182-2.323.6440.86914.38943.141
157YY_DT123DA124:DT113DA114_HH0.552-0.2873.555-0.396-8.76834.9090.908-0.9563.516-14.3380.64835.962
159YY_DT125DA126:DT111DA112_HH0.183-0.6313.407-2.1586.59642.083-1.55-0.4753.2649.1112.98142.626
166YY_DT132DT133:DA104DA105_HH-1.23-0.0863.0972.0145.17723.355-1.763.5622.89512.562-4.88723.997
167YY_DT133DA134:DT103DA104_HH0.6720.9753.5460.1431.23945.8391.135-0.8483.5721.59-0.18445.855
169YY_DT135DC136:DG101DA102_HH0.217-0.4183.497-6.2750.55540.31-0.664-1.0483.4210.89.03940.779

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.