1OUQ: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785

Search for released structures

NDB ID: PD0404 PDB ID: 1OUQ

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	CC_DA102DT103:DA134DT135_DD	1.241	-1.202	3.264	5.05	-2.439	37.425	-1.53	-1.242	3.464	-3.775	-7.816	37.828
1	4	CC_DA104DA105:DT132DT133_DD	1.104	-0.446	3.139	-1.097	5.619	33.491	-1.612	-2.056	2.991	9.663	1.886	33.963
1	5	CC_DA105DC106:DG131DT132_DD	0.231	-1.829	3.644	-0.478	1.801	22.589	-5.365	-0.777	3.484	4.587	1.219	22.664
1	12	CC_DA112DT113:DA124DT125_DD	0.908	-1.46	3.253	-4.539	-3.545	23.028	-2.377	-3.713	3.203	-8.706	11.147	23.728
1	14	CX_DA114DT116:DA121DT123_DD	-0.846	-1.769	6.772	2.023	-1.104	53.635	-1.817	1.198	6.771	-1.223	-2.241	53.681
1	6	CC_DC106UMP107:DA130DG131_DD	-0.354	-0.711	3.647	-5.949	-2.515	41.365	-0.699	-0.207	3.696	-3.534	8.36	41.844
1	9	CC_DC109DG110:DC127DG128_DD	0.467	0.879	3.46	1.65	7.374	34.291	0.254	-0.505	3.584	12.322	-2.757	35.09
1	1	CC_DG101DA102:DT135DC136_DD	-0.201	-0.336	2.879	-10.975	-4.231	39.765	-0.07	-0.767	2.854	-6.061	15.722	41.401
1	10	CC_DG110DT111:DA126DC127_DD	0.626	0.227	3.108	0.112	0.853	31.49	0.267	-1.133	3.115	1.571	-0.206	31.501
1	3	CC_DT103DA104:DT133DA134_DD	-0.944	0.81	3.152	0.774	0.449	40.742	1.115	1.438	3.143	0.645	-1.111	40.752
1	8	CC_DT108DC109:DG128DA129_DD	-0.065	-0.407	3.265	1.611	1.654	36.219	-0.884	0.329	3.238	2.658	-2.588	36.29
1	11	CC_DT111DA112:DT125DA126_DD	0.198	-0.902	3.433	5.936	9.194	36.415	-2.587	0.47	3.116	14.319	-9.244	37.97
1	13	CC_DT113DA114:DT123DA124_DD	-0.574	-0.764	3.309	6.051	-5.436	46.884	-0.505	1.206	3.279	-6.772	-7.539	47.545
1	7	CC_UMP107DT108:DA129DA130_DD	-0.196	-0.68	2.716	7.584	-2.54	28.933	-0.879	1.679	2.63	-4.965	-14.824	29.996
1	18	XX_DA119DT120:DA117DT118_DD	1.315	-0.449	5.429	19.038	-14.623	4.259	8.211	8.961	2.251	-48.784	-63.512	24.375
1	23	XX_DA124DT125:DA112DT113_DD	-1.122	-1.152	3.305	-1.848	-3.162	27.743	-1.602	1.865	3.477	-6.558	3.833	27.979
1	25	XX_DA126DC127:DG110DT111_DD	0.04	0.281	2.741	-0.936	4.053	26.074	-0.297	-0.298	2.749	8.911	2.058	26.398
1	28	XX_DA129DA130:DT107DT108_DD	-0.168	-0.299	2.962	-3.265	2.255	34.322	-0.82	-0.174	2.939	3.805	5.51	34.544
1	29	XX_DA130DG131:DC106DT107_DD	0.156	-0.797	3.304	-5.823	6.251	36.588	-2.046	-0.994	3.071	9.794	9.123	37.538
1	33	XX_DA134DT135:DA102DT103_DD	-0.054	-0.965	3.021	0.828	0.536	29.693	-1.985	0.266	3.0	1.045	-1.615	29.709
1	21	XX_DC122DT123:DA114DG115_DD	-0.051	-1.021	3.288	0.495	-8.601	34.985	-0.376	0.156	3.434	-14.045	-0.808	35.998
1	26	XX_DC127DG128:DC109DG110_DD	-0.159	0.675	3.385	-5.129	5.15	27.306	0.114	-0.937	3.424	10.671	10.627	28.239
1	16	XX_DG117DT118:DA119DC120_DD	0.867	-0.245	3.494	10.503	10.253	37.666	-1.626	0.044	3.43	15.193	-15.564	40.328
1	20	XX_DG121DC122:DG115DC116_DD	-0.456	-0.515	3.645	0.993	-1.536	30.127	-0.64	1.101	3.649	-2.951	-1.908	30.181
1	27	XX_DG128DA129:DT108DC109_DD	-0.087	-0.234	3.392	4.437	4.764	34.797	-1.109	0.816	3.296	7.88	-7.34	35.382
1	30	XX_DG131DT132:DA105DC106_DD	-0.821	-1.083	3.454	-0.643	-2.686	34.06	-1.389	1.288	3.541	-4.577	1.095	34.168
1	15	XX_DT116DG117:DC120DA121_DD	-0.401	0.214	3.932	-5.547	12.704	27.36	-2.69	-0.593	3.681	24.931	10.887	30.612
1	17	XX_DT118DA119:DT118DA119_DD	0.558	1.072	4.103	5.295	3.765	53.106	0.889	-0.195	4.198	4.194	-5.897	53.473
1	19	XX_DT120DG121:DC116DA117_DD	1.09	1.212	3.453	2.389	-14.956	50.936	2.336	-1.065	3.055	-16.965	-2.71	52.996
1	22	XX_DT123DA124:DT113DA114_DD	0.641	-0.313	3.547	0.422	-8.437	43.292	0.451	-0.811	3.55	-11.308	-0.566	44.069
1	24	XX_DT125DA126:DT111DA112_DD	0.211	-0.722	3.6	4.133	7.92	45.945	-1.626	0.108	3.443	10.034	-5.236	46.759
1	31	XX_DT132DT133:DA104DA105_DD	-0.603	-0.405	3.056	0.968	4.978	24.065	-2.359	1.69	2.888	11.773	-2.288	24.586
1	32	XX_DT133DA134:DT103DA104_DD	0.358	1.017	3.4	-3.755	0.733	46.11	1.23	-0.787	3.377	0.934	4.785	46.26
1	34	XX_DT135DC136:DG101DA102_DD	-0.387	0.272	3.357	0.017	-4.749	46.033	0.76	0.494	3.315	-6.054	-0.022	46.264
1	49	GY_A3P115DT116:DA121DT122_HH	-0.579	-0.883	2.912	7.857	-2.954	21.397	-1.303	3.891	2.631	-7.589	-20.188	22.967
1	36	GG_DA102DT103:DA134DT135_HH	0.097	-0.73	3.122	5.938	1.922	33.308	-1.547	0.742	3.048	3.316	-10.248	33.871
1	38	GG_DA104DA105:DT132DT133_HH	0.166	-0.348	3.027	-3.124	1.199	26.325	-1.049	-1.119	2.969	2.618	6.825	26.533
1	39	GG_DA105DC106:DG131DT132_HH	0.916	-1.625	3.227	-1.701	4.855	30.626	-3.913	-2.019	2.887	9.111	3.192	31.045
1	46	GG_DA112DT113:DA124DT125_HH	0.758	-1.037	3.229	-3.346	0.841	30.383	-2.128	-2.08	3.101	1.597	6.358	30.574
1	48	GG_DA114A3P115:DT122DT123_HH	-0.301	-0.998	3.178	-7.564	-0.845	32.137	-1.615	-0.738	3.189	-1.501	13.43	33.003
1	40	GG_DC106UMP107:DA130DG131_HH	-0.128	-1.12	3.662	-3.945	2.803	33.743	-2.405	-0.477	3.551	4.798	6.753	34.079
1	43	GG_DC109DG110:DC127DG128_HH	0.193	0.699	3.276	1.792	2.764	33.103	0.754	-0.035	3.327	4.836	-3.136	33.262
1	35	GG_DG101DA102:DT135DC136_HH	0.975	-0.21	3.091	-0.239	-5.804	40.732	0.298	-1.412	3.085	-8.287	0.341	41.126
1	44	GG_DG110DT111:DA126DC127_HH	0.425	-0.01	3.393	0.202	7.004	28.014	-1.64	-0.807	3.296	14.188	-0.409	28.86
1	37	GG_DT103DA104:DT133DA134_HH	-0.225	0.928	3.647	1.774	4.783	45.217	0.724	0.467	3.711	6.197	-2.299	45.489
1	42	GG_DT108DC109:DG128DA129_HH	0.119	-0.133	2.996	0.597	7.159	36.871	-1.06	-0.113	2.922	11.189	-0.932	37.541
1	45	GG_DT111DA112:DT125DA126_HH	-0.003	-0.813	3.525	5.372	3.079	38.9	-1.597	0.684	3.423	4.587	-8.004	39.37
1	47	GG_DT113DA114:DT123DA124_HH	-0.722	-0.694	3.671	3.698	-4.576	42.308	-0.437	1.409	3.65	-6.304	-5.094	42.696
1	41	GG_UMP107DT108:DA129DA130_HH	-0.28	-0.701	3.317	6.437	-7.595	32.381	0.059	1.553	3.28	-13.234	-11.217	33.838
1	53	YY_DA119DT120:DA117DT118_HH	1.977	1.315	2.912	16.039	-1.818	43.622	1.822	-1.165	3.349	-2.353	-20.757	46.376
1	58	YY_DA124DT125:DA112DT113_HH	-0.987	-0.92	3.385	0.093	-1.213	34.664	-1.349	1.671	3.412	-2.035	-0.156	34.685
1	60	YY_DA126DC127:DG110DT111_HH	0.081	-0.037	3.111	2.444	2.177	20.323	-1.016	0.799	3.078	6.117	-6.869	20.582
1	63	YY_DA129DA130:DT107DT108_HH	0.066	-0.632	3.123	-4.765	-0.616	36.958	-0.911	-0.707	3.101	-0.967	7.478	37.259
1	64	YY_DA130DG131:DC106DT107_HH	0.795	-0.744	3.215	-3.245	5.281	33.411	-2.08	-1.857	2.978	9.089	5.585	33.966
1	68	YY_DA134DT135:DA102DT103_HH	-0.66	-0.709	2.964	1.225	-0.975	29.324	-1.209	1.541	2.956	-1.925	-2.418	29.365
1	56	YY_DC122DT123:DA114DG115_HH	-0.04	-0.819	3.105	-0.277	-6.272	39.373	-0.499	0.027	3.193	-9.237	0.408	39.851
1	61	YY_DC127DG128:DC109DG110_HH	-0.817	1.681	3.673	-2.8	8.927	46.071	1.241	0.752	3.956	11.27	3.535	46.961
1	51	YY_DG117DT118:DA119DC120_HH	-1.309	0.449	4.226	4.681	30.852	39.382	-2.503	2.014	3.527	39.202	-5.947	49.858
1	55	YY_DG121DC122:DG115DC116_HH	-0.513	-0.242	3.428	-2.854	-2.274	27.927	0.067	0.348	3.47	-4.686	5.881	28.16
1	62	YY_DG128DA129:DT108DC109_HH	-0.054	-1.245	3.091	-0.594	5.121	21.61	-4.975	-0.063	2.726	13.415	1.556	22.209
1	65	YY_DG131DT132:DA105DC106_HH	-0.585	-0.953	3.723	2.482	-2.264	39.255	-1.108	1.203	3.727	-3.363	-3.687	39.393
1	50	YY_DT116DG117:DC120DA121_HH	-1.42	0.584	4.238	-4.022	34.335	15.634	-5.655	1.422	2.455	65.939	7.725	37.842
1	52	YY_DT118DA119:DT118DA119_HH	-0.28	2.801	4.207	-1.794	-11.143	34.312	6.355	0.158	3.182	-18.285	2.944	36.068
1	54	YY_DT120DG121:DC116DA117_HH	0.816	1.658	3.918	-10.484	0.633	41.903	2.182	-2.32	3.644	0.869	14.389	43.141
1	57	YY_DT123DA124:DT113DA114_HH	0.552	-0.287	3.555	-0.396	-8.768	34.909	0.908	-0.956	3.516	-14.338	0.648	35.962
1	59	YY_DT125DA126:DT111DA112_HH	0.183	-0.631	3.407	-2.158	6.596	42.083	-1.55	-0.475	3.264	9.111	2.981	42.626
1	66	YY_DT132DT133:DA104DA105_HH	-1.23	-0.086	3.097	2.014	5.177	23.355	-1.76	3.562	2.895	12.562	-4.887	23.997
1	67	YY_DT133DA134:DT103DA104_HH	0.672	0.975	3.546	0.143	1.239	45.839	1.135	-0.848	3.572	1.59	-0.184	45.855
1	69	YY_DT135DC136:DG101DA102_HH	0.217	-0.418	3.497	-6.275	0.555	40.31	-0.664	-1.048	3.421	0.8	9.039	40.779

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.