A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Sep-2020 number of released structures: 10967
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NDB ID: PD0409  PDB ID: 1OZJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_DA1003:DT2013_D-0.191-0.0230.0796.722-2.544.646
18C_DA1008:DT2008_D0.001-0.044-0.1952.311-11.938-3.945
110C_DA1010:DT2006_D0.25-0.082-0.007-2.695-11.048-2.507
112C_DA1012:DT2004_D-0.074-0.208-0.195-1.710.805-5.736
114C_DA1014:DT2002_D0.202-0.242-0.3912.368-8.611-2.109
12C_DC1002:DG2014_D0.125-0.0920.025-4.664-5.369-4.935
16C_DC1006:DG2010_D0.19-0.1770.191-9.055-10.852-3.254
111C_DC1011:DG2005_D0.058-0.2930.0560.085-5.36-0.939
115C_DC1015:DG2001_D-0.5583.292-0.758-11.739-7.138-86.838
14C_DG1004:DC2012_D-0.364-0.1280.1234.858-10.3593.973
19C_DG1009:DC2007_D-0.268-0.1560.1018.98-11.643-2.136
11C_DT1001:DA2015_D-1.37-0.2710.107-10.956-12.171.815
15C_DT1005:DA2011_D-0.133-0.249-0.073-5.225-18.104-1.368
17C_DT1007:DA2009_D0.081-0.0650.022-7.006-11.926-2.867
113C_DT1013:DA2003_D0.564-0.1150.0047.356-5.1787.969

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.