A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Sep-2020 number of released structures: 10967
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NDB ID: PD0409  PDB ID: 1OZJ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13CC_DA1003DG1004:DC2012DT2013_DD-0.301-0.4623.254-1.7237.22432.581-1.9810.2433.09512.6723.02333.394
18CC_DA1008DG1009:DC2007DT2008_DD0.3160.3243.156-3.1466.46128.638-0.7-1.2723.10112.8096.23829.508
110CC_DA1010DC1011:DG2005DT2006_DD0.797-0.9233.269-0.383.38931.881-2.271-1.513.1476.1480.68932.059
112CC_DA1012DT1013:DA2003DT2004_DD0.615-0.9573.174-0.6433.38228.761-2.626-1.3643.036.7781.28928.962
114CC_DA1014DC1015:DG2001DT2002_DD1.195-1.8573.1649.2459.73777.634-1.723-0.6993.0567.713-7.32378.606
12CC_DC1002DA1003:DT2013DG2014_DD0.7140.4233.140.0833.27129.3680.158-1.3833.176.427-0.16329.546
16CC_DC1006DT1007:DA2009DG2010_DD-0.2640.3223.2893.8227.24728.241-0.9421.3533.20814.472-7.63229.383
111CC_DC1011DA1012:DT2004DG2005_DD0.212-0.063.3323.2179.89333.325-1.6330.1463.19216.751-5.44834.867
14CC_DG1004DT1005:DA2011DC2012_DD-0.958-0.743.547-0.2723.44134.915-1.7821.5463.4685.7170.45235.08
19CC_DG1009DA1010:DT2006DC2007_DD0.026-0.0933.584-0.7865.96637.109-0.995-0.1533.5269.2991.22537.577
11CC_DT1001DC1002:DG2014DA2015_DD-0.0750.2143.3251.3412.45743.6630.0490.2313.3283.299-1.80143.749
15CC_DT1005DC1006:DG2010DA2011_DD-0.143-0.2663.385-1.5452.80437.915-0.7760.0163.3614.3072.37238.045
17CC_DT1007DA1008:DT2008DA2009_DD-0.072.7333.0230.047-9.13551.2683.6380.0822.535-10.462-0.05452.021
113CC_DT1013DA1014:DT2002DA2003_DD-0.524-0.4873.463.78111.46729.865-2.9811.6382.98921.193-6.98832.162

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.