A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: PD0422  PDB ID: 1P3O 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.036-0.347-0.072-17.1675.166-8.736
14I_DA4:DT289_J0.393-0.131-0.14210.533-3.5731.887
15I_DA5:DT288_J0.7770.1520.2131.136-6.839-2.146
17I_DA7:DT286_J0.9620.2260.0474.757-8.376-0.73
111I_DA11:DT282_J-0.0570.250.3754.8850.713-18.717
117I_DA17:DT276_J0.894-0.2910.64615.912-6.382-6.441
121I_DA24:DT269_J-0.5130.3560.4393.397-4.489.162
124I_DA27:DT266_J-1.008-0.050.58425.744-4.112-35.875
125I_DA28:DT265_J1.2390.420.61215.919-6.017-1.225
126I_DA29:DT264_J0.21-0.351-0.4342.038-8.806-1.602
127I_DA30:DT263_J0.690.2870.24716.007-11.463-1.469
132I_DA35:DT258_J0.8160.061-0.123-8.103-1.355.051
138I_DA41:DT252_J-0.4750.2660.17.466-6.839.851
139I_DA42:DT251_J0.1210.118-0.18110.873-6.8732.773
140I_DA43:DT250_J-0.1940.40.05-1.789-2.5753.481
148I_DA51:DT242_J0.2560.1890.4125.2440.0012.483
151I_DA54:DT239_J-0.123-0.231-0.652.858-6.547-10.055
152I_DA55:DT238_J0.196-0.144-0.6587.169-11.2662.037
153I_DA57:DT236_J0.433-0.1580.429-12.824-0.102-4.77
157I_DA61:DT232_J0.823-0.063-0.448-6.425-10.8531.293
163I_DA67:DT226_J-0.975-0.464-0.0447.024-8.598-17.047
168I_DA72:DT221_J0.0460.2340.5111.589-5.838-1.488
169I_DA73:DT220_J0.3660.267-0.0465.726-6.4895.066
178I_DA82:DT211_J-0.211-0.048-0.0970.718-5.114-1.61
179I_DA83:DT210_J0.561-0.103-0.656-3.444-0.565-1.427
181I_DA85:DT208_J0.2950.1820.5022.865-6.0894.062
191I_DA95:DT198_J-0.021-0.0680.1-8.129-1.9570.287
195I_DA99:DT194_J0.921-0.343-0.058-0.06-8.944-4.488
198I_DA102:DT191_J-1.017-0.069-0.114-9.441-0.3459.863
1105I_DA109:DT184_J-0.222-0.0380.46810.735-7.862-1.282
1106I_DA110:DT183_J0.726-0.1740.2898.228-3.372-0.484
1107I_DA111:DT182_J0.411-0.0670.054-1.091-5.9691.404
1109I_DA113:DT180_J0.313-0.2040.62414.844-2.2161.118
1111I_DA115:DT178_J-0.169-0.376-0.4369.391-7.931-0.596
1119I_DA124:DT169_J0.407-0.1440.22212.894-6.422.267
1121I_DA127:DT166_J-0.5540.413-0.05112.769-4.91.48
1127I_DA133:DT160_J-0.492-0.178-0.4768.692-6.8621.678
1133I_DA139:DT154_J-0.0950.0650.4830.675-5.3693.329
1135I_DA141:DT152_J-0.072-0.4990.127-6.949-3.482-3.465
1139I_DA145:DT148_J0.503-0.414-0.2934.687-3.0220.511
13I_DC3:DG290_J-0.001-0.139-0.18-0.344-6.552.135
19I_DC9:DG284_J-1.0490.4180.084-11.016-6.8469.296
110I_DC10:DG283_J0.278-0.434-0.3536.3633.784-3.095
112I_DC12:DG281_J-0.40.143-0.1574.131-4.292-12.773
113I_DC13:DG280_J-0.5840.4870.827-16.83-4.4610.362
116I_DC16:DG277_J0.097-0.0181.041-13.896-2.165-7.199
119I_DC22:DG271_J-0.8110.193-0.187-0.113-5.43-0.837
122I_DC25:DG268_J-0.4430.5250.989-4.2934.9669.114
123I_DC26:DG267_J-0.3720.589-0.62117.5013.2519.224
141I_DC44:DG249_J-0.8820.393-0.4454.524-1.716.0
144I_DC47:DG246_J-0.1550.5131.031-12.721-7.838.405
146I_DC49:DG244_J0.319-0.306-0.693.0691.2262.238
147I_DC50:DG243_J0.0060.089-0.196-0.333-4.636-0.796
150I_DC53:DG240_J-0.720.378-0.77417.547-7.097-2.09
156I_DC60:DG233_J-0.5120.202-0.050.049-1.5117.39
162I_DC66:DG227_J0.315-0.166-0.23214.0120.264-1.454
165I_DC69:DG224_J-0.9630.2250.328-3.91-9.7330.522
172I_DC76:DG217_J0.952-0.1330.432-3.09-4.252-1.709
173I_DC77:DG216_J-0.519-0.070.4684.62-10.794-7.328
175I_DC79:DG214_J-1.534-0.270.0381.02-17.536-11.341
180I_DC84:DG209_J-0.0440.0250.034-7.915-0.9882.493
184I_DC88:DG205_J0.139-0.1280.4370.454-9.095-6.526
185I_DC89:DG204_J-0.121-0.0460.615-12.195-5.43-3.43
197I_DC101:DG192_J-0.2520.0270.3188.125-10.984-4.285
1103I_DC107:DG186_J0.4670.385-0.5210.1613.1777.527
1104I_DC108:DG185_J-0.4130.2470.6642.078-7.8132.474
1110I_DC114:DG179_J-1.0260.183-0.63719.845-6.547-6.722
1112I_DC116:DG177_J0.433-0.15-0.4157.164-4.19-0.768
1123I_DC129:DG164_J-0.2150.2170.277-4.629-2.4298.437
1126I_DC132:DG161_J0.388-0.0420.0144.546-6.472.701
115I_DG15:DC278_J-1.2860.0820.134-10.963-7.3710.056
118I_DG18:DC275_J0.8560.1730.65211.492-12.435-0.081
128I_DG31:DC262_J0.874-0.36-0.407-9.294-5.807-1.135
130I_DG33:DC260_J-0.190.355-0.687-9.703-4.0169.66
136I_DG39:DC254_J0.77-0.1230.7811.678-5.2140.195
137I_DG40:DC253_J-0.1780.378-0.1230.7180.0714.887
143I_DG46:DC247_J-0.021-0.392-0.107-5.486-16.773-9.824
154I_DG58:DC235_J1.8740.9670.303-2.987-0.7463.587
155I_DG59:DC234_J-0.007-0.247-0.5592.177-2.16-3.476
159I_DG63:DC230_J0.234-0.045-0.104-10.24-0.5750.716
164I_DG68:DC225_J-0.232-0.189-0.034-0.6241.376-0.519
166I_DG70:DC223_J-0.0470.33-0.096-0.79-4.2347.238
167I_DG71:DC222_J0.1510.290.2339.601-0.39910.437
174I_DG78:DC215_J0.379-0.083-0.0622.6570.7444.858
177I_DG81:DC212_J-0.5720.162-0.298-10.387-4.8557.495
183I_DG87:DC206_J-0.126-0.250.3-0.4984.5131.846
190I_DG94:DC199_J0.67-0.085-0.22-6.758-1.315-4.207
193I_DG97:DC196_J0.4630.1370.073.626-7.6692.35
194I_DG98:DC195_J-0.026-0.151-0.1893.1-0.2755.082
196I_DG100:DC193_J0.194-0.0060.159.197-3.163.071
199I_DG103:DC190_J0.4920.572-0.206-14.204-6.469.154
1117I_DG121:DC172_J0.8980.3730.209-14.067-1.3545.367
1118I_DG122:DC171_J-0.5220.688-0.029-0.913-3.0333.854
1120I_DG125:DC168_J0.7340.4640.06413.354-11.8972.431
1125I_DG131:DC162_J-0.252-0.150.719-6.061-3.062-3.844
1128I_DG134:DC159_J0.5750.2780.32212.674-2.9186.053
1129I_DG135:DC158_J-0.19-0.151-0.4343.181-4.2-3.346
1131I_DG137:DC156_J-1.165-0.5930.1420.634.254-0.862
1132I_DG138:DC155_J-0.1420.138-0.1747.056-5.18.905
1138I_DG144:DC149_J0.5970.204-0.635-7.581-3.123-4.054
12I_DT2:DA291_J-1.2840.1030.417-5.111-3.408-7.817
16I_DT6:DA287_J0.718-0.1180.04914.02-2.715-5.249
18I_DT8:DA285_J-0.0610.1790.104-0.827-2.125-2.58
114I_DT14:DA279_J0.2630.0790.415-7.197-4.694-5.825
120I_DT23:DA270_J-0.4470.461-0.3881.207-8.9191.579
129I_DT32:DA261_J-1.0810.183-0.720.334-3.8260.063
131I_DT34:DA259_J-1.1990.05-1.2077.007-5.634-2.069
133I_DT36:DA257_J-0.4250.17-0.237-5.935-0.9293.161
134I_DT37:DA256_J-0.086-0.2890.249-11.16-0.214-0.578
135I_DT38:DA255_J-0.031-0.4120.581-7.197-3.039-0.901
142I_DT45:DA248_J-0.7370.0130.3031.596-3.457.747
145I_DT48:DA245_J-0.79-0.2340.455-5.794-7.687-1.293
149I_DT52:DA241_J-0.5530.107-0.21918.867-1.37-5.304
158I_DT62:DA231_J-0.5090.408-0.5921.304-4.4125.719
160I_DT64:DA229_J-0.46-0.057-0.011-8.253-4.212-4.018
161I_DT65:DA228_J-0.283-0.109-0.1674.151-0.713.648
170I_DT74:DA219_J-0.0240.180.169-5.48-9.3950.362
171I_DT75:DA218_J-0.73-0.246-0.352-2.145-9.1-1.061
176I_DT80:DA213_J0.286-0.259-0.622-8.986-5.048-0.63
182I_DT86:DA207_J-0.1270.1740.3073.312-4.4741.37
186I_DT90:DA203_J-0.0310.1110.392-17.058-12.019-4.038
187I_DT91:DA202_J-0.157-0.218-0.4284.494-5.9496.466
188I_DT92:DA201_J0.2630.236-0.027-12.96-13.71511.165
189I_DT93:DA200_J-0.150.147-0.357-4.536-5.612-1.055
192I_DT96:DA197_J0.340.063-0.091.66-2.0043.392
1100I_DT104:DA189_J-0.1150.1140.133-4.735-5.3522.015
1101I_DT105:DA188_J-0.4820.3920.43-4.751-8.682-0.554
1102I_DT106:DA187_J0.248-0.1970.087-10.184-3.048-5.281
1108I_DT112:DA181_J-0.9730.338-0.149-0.781-9.6441.438
1113I_DT117:DA176_J0.1820.325-0.261-1.838-3.5343.616
1114I_DT118:DA175_J-0.028-0.243-0.025-7.845-5.975-3.428
1115I_DT119:DA174_J-1.0090.297-0.179-11.404-5.3171.962
1116I_DT120:DA173_J-0.1350.112-0.039-15.108-3.124-8.777
1122I_DT128:DA165_J-0.8040.315-0.0156.571-0.185-2.297
1124I_DT130:DA163_J0.054-0.3840.92-8.291-6.848-4.266
1130I_DT136:DA157_J-0.194-0.03-0.185-2.8330.1430.545
1134I_DT140:DA153_J-0.314-0.1370.145-0.883-3.416-0.224
1136I_DT142:DA151_J-0.6-0.2320.111-4.773-4.7770.831
1137I_DT143:DA150_J0.241-0.032-0.042-8.549-6.685-0.276
1140I_DT146:DA147_J0.545-0.578-0.5776.133-0.34-0.796

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.