A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 1P5P  PDB ID: 1P5P 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17A_A8:U71_A-0.449-0.1540.677-3.116-20.16717.558
118A_A24:U59_A-0.383-0.365-0.357-5.22-11.4421.34
122A_A28:U55_A0.161-0.1-1.581-38.6224.736-12.16
124A_A30:U53_A-3.894-1.488-0.698-2.163-14.227-105.3
125A_A31:A51_A-5.84.8760.206-17.440.952-173.98
126A_A32:U50_A-6.782-4.189-0.80614.652-12.4275.113
13A_C3:G75_A-0.445-0.1170.27311.056-27.7093.096
110A_C16:G68_A-0.3650.01-0.0129.301-21.2896.308
114A_C20:G63_A-0.191-0.219-0.499-6.764-16.5177.638
117A_C23:G60_A-0.401-0.47-1.087-0.277-19.7025.609
119A_C25:G58_A-0.3-0.157-0.44214.771-6.781-2.653
121A_C27:G56_A-0.214-0.28-0.6792.94-22.949-3.402
128A_C34:G48_A-0.207-0.133-0.83712.114-16.1446.155
131A_C37:G45_A-0.4-0.1-0.298-7.565-0.4941.674
11A_G1:C77_A0.657-0.0690.81439.488-39.066-19.186
12A_G2:C76_A0.554-0.1190.3919.262-34.95-16.123
15A_G5:C73_A0.193-0.164-0.284-14.395-18.8523.521
16A_G7:C72_A0.447-0.061-0.099-11.595-14.621-1.541
18A_G9:C70_A0.4380.235-0.095-9.062-36.80525.873
19A_G10:C69_A0.455-0.1670.6282.07-13.0-1.539
112A_G18:C66_A0.239-0.267-0.184.299-25.959-4.614
120A_G26:A57_A1.375-5.5390.20729.374-3.5964.796
123A_G29:A54_A6.537-3.362-1.0062.4436.317-9.546
127A_G33:U49_A-2.258-0.4950.20210.42-6.232-0.209
129A_G35:C47_A0.35-0.37-1.269-3.007-8.0291.783
14A_U4:A74_A-0.104-0.2510.76312.583-16.7462.342
111A_U17:A67_A0.624-0.2340.1868.325-20.3899.713
113A_U19:G65_A2.166-0.567-0.345-4.057-14.071-11.336
115A_U21:C62_A-0.171-1.5970.25215.26-16.44419.31
116A_U22:U61_A-0.908-1.542-1.01-3.296-27.6438.84
130A_U36:G46_A0.8270.089-1.48918.093-7.4534.881
132A_U38:A43_A4.605-4.624-2.4310.40526.128-37.53

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.