1P5P: Base Pair Morphology Step Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 1P5P PDB ID: 1P5P

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	AA_A8G9:C70U71_AA	-0.063	-0.229	3.323	7.096	12.257	35.59	-1.905	0.996	3.019	19.144	-11.083	38.219
1	17	AA_A24C25:G58U59_AA	0.433	-1.085	2.782	0.166	-2.292	38.458	-1.4	-0.638	2.841	-3.476	-0.252	38.524
1	21	AA_A28G29:A54U55_AA	-0.319	0.133	2.279	-3.745	-7.015	65.471	0.321	0.188	2.27	-6.461	3.45	65.899
1	23	AA_A30A31:A51U53_AA	1.738	-1.154	3.17	0.072	-12.288	84.085	-0.573	-1.287	3.285	-9.132	-0.053	84.812
1	24	AA_A31A32:U50A51_AA	-1.201	1.316	2.889	-1.877	6.48	-58.757	-1.618	-1.3	2.707	-6.58	-1.906	-59.108
1	25	AA_A32G33:U49U50_AA	0.392	-0.651	3.528	-12.399	0.89	56.276	-0.728	-1.124	3.372	0.931	12.97	57.523
1	3	AA_C3U4:A74G75_AA	0.425	-1.279	3.193	-6.324	0.948	32.337	-2.41	-1.782	3.02	1.682	11.217	32.946
1	9	AA_C16U17:A67G68_AA	-0.299	-0.949	3.185	-2.394	15.819	36.04	-3.145	0.182	2.577	24.156	3.656	39.324
1	13	AA_C20U21:C62G63_AA	0.58	0.772	2.734	-9.571	15.354	29.685	-0.76	-2.255	2.529	27.039	16.855	34.658
1	16	AA_C23A24:U59G60_AA	-0.166	0.342	3.571	-5.309	21.098	25.912	-3.339	-0.703	2.997	39.373	9.907	33.714
1	18	AA_C25G26:A57G58_AA	2.216	-3.856	0.116	-161.908	2.347	151.561	-1.929	-1.089	-0.439	1.177	81.227	175.578
1	20	AA_C27A28:U55G56_AA	0.006	-1.768	5.617	3.021	4.46	27.57	-5.402	1.178	5.242	9.247	-6.263	28.081
1	27	AA_C34G35:C47G48_AA	-0.367	-0.666	4.041	0.978	18.617	30.21	-4.351	0.776	3.113	32.161	-1.69	35.384
1	30	AA_C37U38:A43G45_AA	0.347	-0.595	3.034	14.726	-9.579	71.981	-0.206	0.156	3.096	-8.033	-12.349	73.811
1	1	AA_G1G2:C76C77_AA	0.727	-0.865	3.852	5.099	12.005	34.859	-3.206	-0.355	3.448	19.226	-8.167	37.148
1	2	AA_G2C3:G75C76_AA	1.825	-1.125	3.054	5.063	-7.957	38.933	-0.73	-2.084	3.412	-11.729	-7.464	40.016
1	5	AA_G5G7:C72C73_AA	-0.963	-1.21	3.227	1.785	5.078	33.631	-2.836	1.916	2.964	8.706	-3.061	34.047
1	6	AA_G7A8:U71C72_AA	0.662	-1.152	2.854	-2.198	-1.649	33.672	-1.749	-1.451	2.858	-2.841	3.787	33.78
1	8	AA_G9G10:C69C70_AA	-0.587	-0.769	2.669	-8.476	10.417	31.113	-2.675	-0.092	2.373	18.384	14.959	33.822
1	11	AA_G18U19:G65C66_AA	0.551	-0.839	3.274	2.917	-2.812	49.687	-0.788	-0.439	3.339	-3.34	-3.465	49.841
1	19	AA_G26C27:G56A57_AA	0.505	-4.364	-2.846	140.014	-95.173	147.569	-2.373	-0.533	-1.935	-47.706	-70.182	177.015
1	22	AA_G29A30:U53A54_AA	-4.296	-1.45	3.399	1.673	13.359	-3.334	-13.705	-15.324	2.733	-75.565	9.465	-13.868
1	26	AA_G33C34:G48U49_AA	0.03	-1.442	3.162	6.225	1.263	38.674	-2.296	0.671	3.083	1.892	-9.322	39.172
1	28	AA_G35U36:G46C47_AA	0.488	-1.134	2.891	0.631	-4.02	34.037	-1.353	-0.739	3.009	-6.837	-1.073	34.272
1	4	AA_U4G5:C73A74_AA	-0.206	-1.618	4.288	5.327	0.172	31.408	-2.989	1.644	4.188	0.315	-9.753	31.846
1	10	AA_U17G18:C66A67_AA	-0.921	-0.719	3.201	3.767	14.693	31.105	-3.305	2.089	2.495	25.581	-6.559	34.524
1	12	AA_U19C20:G63G65_AA	0.181	-1.542	3.146	3.732	11.232	17.643	-8.068	0.797	1.842	32.318	-10.738	21.219
1	14	AA_U21U22:U61C62_AA	-0.583	-0.413	4.142	8.276	10.687	39.809	-1.954	1.881	3.728	15.174	-11.751	41.953
1	15	AA_U22C23:G60U61_AA	-0.893	-0.495	2.988	-1.344	10.677	33.72	-2.231	1.292	2.742	17.85	2.246	35.348
1	29	AA_U36C37:G45G46_AA	0.052	-2.33	4.283	-5.823	3.392	30.436	-5.159	-1.508	3.929	6.364	10.925	31.156

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.