A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
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NDB ID: 1PBM  PDB ID: 1PBM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_C1:G12_B-0.122-0.1770.4989.909-31.115-4.205
13A_C3:G10_B0.304-0.1360.2344.086-21.524-3.511
15A_C5:G8_B0.565-0.1750.226-2.131-17.628-3.994
12A_G2:C11_B-0.576-0.1760.2782.594-17.509-4.309
14A_G4:C9_B-0.232-0.1330.249-1.685-21.42-3.882
16A_G6:C7_B0.01-0.160.321-11.918-32.355-3.782

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.