A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 1PJY  PDB ID: 1PJY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
110A_A10:A13_A5.998-3.5351.257-9.80614.359-25.775
13A_C3:G20_A0.621-0.29-0.0313.48618.0191.123
14A_C4:G19_A-0.458-0.159-0.537-5.2242.1340.445
17A_C7:G16_A-0.22-0.1660.3077.54312.6533.738
18A_C8:G15_A0.944-0.4250.0729.0318.9671.364
19A_C9:G14_A1.052-0.5090.397-15.747-1.251-3.1
11A_G1:C22_A-0.615-0.2290.099-2.522-4.503-1.852
12A_G2:C21_A-0.818-0.3220.017-3.9716.428-0.084
15A_U5:A18_A-0.223-0.1210.448-7.7491.209-3.513
16A_U6:A17_A0.327-0.239-0.0811.951-0.286-1.216

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.