1PJY: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 1PJY PDB ID: 1PJY

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	10	A_A10:A13_A	5.998	-3.535	1.257	-9.806	14.359	-25.775
1	3	A_C3:G20_A	0.621	-0.29	-0.031	3.486	18.019	1.123
1	4	A_C4:G19_A	-0.458	-0.159	-0.537	-5.224	2.134	0.445
1	7	A_C7:G16_A	-0.22	-0.166	0.307	7.543	12.653	3.738
1	8	A_C8:G15_A	0.944	-0.425	0.072	9.031	8.967	1.364
1	9	A_C9:G14_A	1.052	-0.509	0.397	-15.747	-1.251	-3.1
1	1	A_G1:C22_A	-0.615	-0.229	0.099	-2.522	-4.503	-1.852
1	2	A_G2:C21_A	-0.818	-0.322	0.017	-3.971	6.428	-0.084
1	5	A_U5:A18_A	-0.223	-0.121	0.448	-7.749	1.209	-3.513
1	6	A_U6:A17_A	0.327	-0.239	-0.081	1.951	-0.286	-1.216

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.