A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 1PJY  PDB ID: 1PJY 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_C3C4:G19G20_AA0.086-1.7994.2644.85210.96423.448-7.4621.3643.08424.991-11.0626.297
14AA_C4U5:A18G19_AA-0.619-1.4193.758-4.2210.01229.547-4.6710.2763.17718.8477.94331.44
17AA_C7C8:G15G16_AA-0.095-1.2333.4033.10819.56633.607-4.1130.5022.34730.75-4.88438.866
18AA_C8C9:G14G15_AA0.148-1.3495.1093.42212.06836.578-4.2820.4124.45618.57-5.26638.6
19AA_C9A10:A13G14_AA-1.359-0.853.265-0.04310.12746.07-1.8711.6973.02512.7580.05447.111
11AA_G1G2:C21C22_AA0.541-1.2223.556-5.95316.52430.62-4.453-1.7712.45728.53510.28135.195
12AA_G2C3:G20C21_AA-0.405-1.3333.835-2.187-0.06435.805-2.1540.2893.854-0.1043.55335.87
15AA_U5U6:A17A18_AA0.7-0.6223.3142.6658.38133.357-2.351-0.7663.11614.293-4.54634.465
16AA_U6C7:G16A17_AA0.022-1.2643.603-3.6246.30229.474-3.762-0.8183.24312.1566.98930.338

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.