A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
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NDB ID: AD0030  PDB ID: 1PWF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_2MU6:DA115_B0.0750.0120.2555.564-18.05812.843
15A_DA5:2MU116_B0.104-0.1360.111-1.922-15.726-1.63
12A_DC2:DG119_B0.165-0.1520.1383.209-11.608-1.077
18A_DC8:DG113_B0.199-0.139-0.11510.054-11.8331.142
110A_DC10:DG111_B0.169-0.120.202-4.8684.958-0.421
11A_DG1:DC120_B-0.334-0.1450.060.367-5.653-0.613
13A_DG3:DC118_B-0.353-0.1620.153-9.028-18.885-0.795
19A_DG9:DC112_B-0.161-0.168-0.053-7.748-10.624-0.338
14A_DT4:FA2117_B-0.209-0.0150.014-12.446-10.658-5.367
17A_FA27:DT114_B0.031-0.074-0.02513.848-3.894-0.023

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.