A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: RR0076  PDB ID: 1Q7Y 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
15A_A16:U527_A120
114A_A25:G518_A911
126A_A37:U445_A120
150A_A45:U115_A323
137A_A60:A86_A21
161A_A74:U103_A120
167A_A80:G97_A1011
149A_A113:G47_A911
148A_A114:A48_A82
154A_A144:U134_A120
153A_A145:U133_A120
179A_A158:U178_A120
181A_A160:U176_A424
182A_A161:A174_A82
1105A_A191:U434_A424
187A_A192:G203_A911
188A_A194:U202_A120
194A_A226:U214_A424
195A_A227:A212_A82
1100A_A232:U207_A120
1110A_A241:U270_A424
1111A_A242:G269_A911
1112A_A243:U268_A00
1116A_A247:G264_A911
1115A_A248:U265_A120
1156A_A285:G367_A911
1163A_A293:U359_A424
1171A_A302:U349_A120
1175A_A305:G345_A00
1214A_A316:U1314_A00
1174A_A329:U346_A50
1181A_A340:U325_A120
1126A_A372:U277_A120
1131A_A378:C271_A00
1190A_A380:U409_A00
1193A_A383:G406_A1011
1202A_A395:C2443_A00
1135A_A415:U425_A120
1191A_A430:A408_A00
1103A_A436:A204_A21
1102A_A437:U205_A221
120A_A460:G452_A610
1203A_A463:A477_A82
1205A_A466:G475_A911
1210A_A485:A509_A21
1211A_A486:A511_A21
1227A_A498:C494_A00
1231A_A502:C490_A00
1212A_A507:C483_A80
1235A_A540:U616_A120
1237A_A542:U614_A120
1242A_A547:U609_A120
1254A_A562:U595_A120
1256A_A566:G592_A1011
1259A_A569:U589_A424
1262A_A573:U584_A120
1267A_A628:U624_A00
1276A_A629:G2070_A610
1268A_A632:U623_A120
1271A_A635:A620_A00
1321A_A654:U751_A120
1330A_A666:G680_A1011
1343A_A721:C707_A425
1303A_A766:C896_A425
1304A_A767:A895_A45
1310A_A773:U888_A120
1358A_A780:U866_A120
1362A_A784:U862_A120
1366A_A788:U858_A120
1368A_A790:G1709_A110
1369A_A791:U823_A120
1371A_A793:U821_A120
1374A_A796:G817_A1011
1375A_A797:G816_A911
1389A_A827:G854_A1011
1391A_A829:U852_A120
1406A_A926:U917_A120
1409A_A929:U1041_A00
1419A_A939:G1031_A1011
1430A_A951:U1016_A120
1434A_A955:A1012_A50
1436A_A957:U1009_A120
1438A_A1005:C963_A00
1452A_A1067:U1047_A120
1455A_A1070:A914_A60
1478A_A1073:A1086_A50
1482A_A1106:C1105_A00
1519A_A1118:U1244_A00
1520A_A1132:A1230_A82
1530A_A1144:U1219_A120
1536A_A1154:C1213_A00
1546A_A1166:U1180_A00
1549A_A1194:A1193_A00
1486A_A1242:U1122_A120
1490A_A1248:U1115_A120
1494A_A1252:U1111_A120
1497A_A1255:U1101_A120
1501A_A1259:U1096_A424
1502A_A1261:U1095_A120
1512A_A1271:U1285_A120
1515A_A1274:U1282_A120
1458A_A1294:G911_A1011
1460A_A1296:U909_A120
1471A_A1307:U1347_A120
1472A_A1308:U1346_A120
1216A_A1317:G1340_A00
1217A_A1318:G1339_A911
1220A_A1321:U1336_A120
1285A_A1355:A643_A00
1286A_A1358:G642_A1011
1294A_A1367:U2057_A120
1553A_A1372:G2053_A1011
1561A_A1392:U1388_A424
1566A_A1399:U1383_A120
1572A_A1407:A1717_A21
1582A_A1411:U1698_A120
1584A_A1414:A1682_A21
1593A_A1424:U1440_A120
1595A_A1437:U1429_A10
1597A_A1448:U1677_A424
1605A_A1459:G1484_A100
1609A_A1463:U1480_A120
1611A_A1465:U1478_A120
1615A_A1504:U1499_A424
1624A_A1515:U1671_A120
1627A_A1518:U1668_A120
1631A_A1527:A1664_A82
1632A_A1528:G1663_A911
1637A_A1533:A1658_A82
1644A_A1567:U1554_A120
1677A_A1581:G1614_A911
1686A_A1590:G1605_A911
1665A_A1616:C1579_A325
1672A_A1624:A1572_A82
1673A_A1626:G1571_A511
1650A_A1637:U1548_A120
1654A_A1641:U1544_A424
1655A_A1642:G1543_A1011
1690A_A1684:U1722_A323
1693A_A1733:G2046_A1011
1696A_A1736:U2043_A120
1697A_A1737:U2042_A120
1702A_A1742:C2037_A226
1705A_A1747:U2034_A120
1714A_A1767:A1776_A82
1718A_A1797:G1794_A00
1721A_A1801:U1791_A120
1724A_A1804:U1788_A120
1731A_A1821:U2028_A120
1732A_A1822:U2027_A120
1739A_A1829:A2018_A60
1748A_A1839:G2642_A110
1757A_A1847:G1884_A1011
1762A_A1852:U1879_A120
1767A_A1858:U1871_A00
1768A_A1859:C1870_A00
1740A_A1885:U1771_A120
1741A_A1886:U2016_A00
1788A_A1912:A1927_A00
1773A_A1931:G1908_A1011
1776A_A1934:U1905_A120
1782A_A1942:U1897_A120
1273A_A2060:U2076_A120
1279A_A2067:U2078_A120
1284A_A2083:U2063_A50
1857A_A2103:A2538_A82
1863A_A2244:G2257_A1011
1829A_A2260:U2133_A00
1833A_A2264:U2129_A120
1835A_A2266:U2127_A120
1842A_A2274:U2120_A120
1870A_A2280:U2290_A120
1432A_A2302:A1014_A82
1876A_A2307:A2300_A72
1879A_A2311:U2297_A120
1890A_A2321:U2378_A221
1895A_A2327:U2373_A120
1901A_A2332:G2352_A100
1898A_A2356:A2369_A21
1913A_A2398:U2390_A60
1916A_A2401:U2387_A120
1917A_A2402:U2386_A120
1923A_A2408:G2379_A00
1140A_A2447:U420_A120
1148A_A2455:U2436_A120
1149A_A2456:U2435_A120
1153A_A2460:A2430_A00
1845A_A2470:U2115_A120
1852A_A2479:U2107_A120
1929A_A2490:U2531_A120
1935A_A2497:U2523_A120
1941A_A2503:A2517_A100
1942A_A2504:G2516_A911
1944A_A2506:U2514_A120
1812A_A2596:G2582_A08
1747A_A2622:G2643_A100
1750A_A2624:U2640_A120
1817A_A2653:G2091_A08
11013A_A2675:G2810_A1011
11015A_A2677:U2808_A120
11016A_A2678:U2807_A120
1969A_A2699:A2566_A21
1972A_A2702:U2693_A424
1973A_A2703:A2691_A82
1976A_A2706:U2688_A120
1994A_A2727:G2755_A00
11024A_A2776:G2798_A1011
11026A_A2778:U2796_A120
11031A_A2783:U2789_A424
11032A_A2784:A2788_A45
1962A_A2800:A2576_A50
11035A_A2827:A2913_A100
11045A_A2838:A2843_A50
11048A_A2854:U2904_A120
11050A_A2856:C2901_A00
11067A_A2875:G2882_A911
1993A_A2896:U2756_A10
13A_C14:G529_A119
14A_C15:G528_A119
17A_C18:G525_A119
118A_C29:G479_A119
123A_C34:G448_A119
125A_C36:G446_A119
129A_C40:A441_A10
133A_C42:G149_A119
135A_C57:G89_A119
136A_C58:G88_A119
139A_C62:G84_A119
142A_C65:G54_A119
159A_C72:G105_A119
160A_C73:G104_A119
169A_C82:G92_A119
170A_C83:G91_A119
145A_C110:G51_A119
146A_C111:G50_A119
171A_C122:G118_A119
173A_C124:G116_A119
155A_C143:G135_A119
175A_C154:G182_A119
176A_C155:G181_A119
177A_C156:G180_A119
189A_C195:G201_A119
196A_C228:U211_A60
198A_C230:G209_A119
1107A_C238:G432_A119
1108A_C239:G431_A119
1109A_C240:G379_A119
1113A_C244:G267_A119
1114A_C245:G266_A119
1118A_C250:G259_A119
1119A_C251:G258_A119
1120A_C252:G257_A119
1158A_C287:G365_A119
1160A_C290:G362_A119
1161A_C291:C361_A00
1164A_C295:C356_A00
1167A_C298:G353_A119
1169A_C300:G351_A119
1172A_C303:C348_A00
1184A_C309:G322_A119
1186A_C311:G320_A119
1180A_C330:G326_A119
1182A_C341:G324_A10
1177A_C342:G334_A119
1178A_C343:G333_A119
1179A_C344:G332_A119
1122A_C368:U281_A00
1129A_C376:G274_A119
1130A_C377:G273_A119
1195A_C385:G404_A119
1132A_C412:G428_A119
1134A_C414:G426_A119
1236A_C541:G615_A119
1241A_C546:G610_A119
1248A_C556:G601_A119
1249A_C557:G600_A119
1250A_C558:G599_A119
1252A_C560:A597_A00
1255A_C563:C594_A00
1260A_C571:C586_A10
1263A_C574:G583_A119
1265A_C576:G581_A119
1269A_C633:G622_A119
1317A_C650:G755_A119
1320A_C653:G752_A119
1325A_C658:G747_A119
1328A_C663:G683_A119
1331A_C667:G679_A119
1332A_C668:G678_A119
1339A_C717:G711_A119
1340A_C718:G710_A119
1341A_C719:G709_A119
1347A_C725:G703_A119
1348A_C726:G702_A119
1350A_C728:G743_A119
1351A_C729:G742_A119
1354A_C732:G739_A119
1299A_C762:G902_A119
1300A_C763:G901_A119
1301A_C764:U900_A00
1306A_C769:G892_A119
1307A_C770:G891_A119
1311A_C774:G887_A119
1356A_C778:A1836_A50
1359A_C781:G865_A119
1361A_C783:G863_A119
1367A_C789:G856_A119
1377A_C799:G814_A119
1381A_C803:G810_A119
1382A_C804:G809_A119
1398A_C838:A843_A60
1405A_C925:G918_A119
1410A_C930:A1040_A10
1411A_C931:G1039_A119
1413A_C933:G1037_A119
1414A_C934:G1036_A119
1416A_C936:G1034_A119
1417A_C937:C1033_A10
1425A_C946:G1021_A119
1444A_C999:G969_A119
1443A_C1000:G968_A119
1439A_C1004:G964_A119
1445A_C1060:G1054_A119
1446A_C1061:G1053_A119
1453A_C1068:G1046_A119
1454A_C1069:G1045_A119
1526A_C1140:G1223_A119
1528A_C1142:G1221_A119
1532A_C1146:G1217_A119
1533A_C1147:G1216_A119
1535A_C1153:G2786_A00
1538A_C1156:G1211_A119
1539A_C1157:G1210_A119
1548A_C1168:G1178_A10
1542A_C1183:G1163_A00
1543A_C1184:G1162_A119
1545A_C1186:G1190_A222
1551A_C1196:G1203_A119
1487A_C1243:G1121_A119
1492A_C1250:G1113_A119
1493A_C1251:G1112_A119
1495A_C1253:G1110_A119
1496A_C1254:G1108_A119
1498A_C1256:G1100_A119
1499A_C1257:G1099_A119
1503A_C1262:G1094_A119
1504A_C1263:G1093_A119
1508A_C1267:G1089_A119
1509A_C1268:G1290_A119
1513A_C1272:G1284_A119
1514A_C1273:G1283_A119
1516A_C1275:C1281_A10
1465A_C1301:G1354_A119
1467A_C1303:G1351_A119
1469A_C1305:G1349_A119
1287A_C1360:G641_A119
1288A_C1361:G640_A119
1292A_C1365:G636_A119
1293A_C1366:G2058_A119
1555A_C1374:G2051_A119
1560A_C1377:G1683_A222
1579A_C1394:U1432_A217
1562A_C1395:G1387_A119
1563A_C1396:G1386_A119
1564A_C1397:G1385_A119
1567A_C1400:G1382_A119
1570A_C1403:G1719_A119
1571A_C1404:G1718_A119
1589A_C1420:G1444_A119
1590A_C1421:G1443_A119
1592A_C1423:G1441_A119
1596A_C1436:G1430_A119
1598A_C1451:G1676_A119
1602A_C1455:G1490_A119
1603A_C1456:G1489_A119
1608A_C1462:G1481_A119
1612A_C1466:C1477_A10
1613A_C1467:G1475_A119
1616A_C1507:G1498_A119
1617A_C1508:G1497_A119
1618A_C1509:G1496_A119
1622A_C1513:G1449_A119
1623A_C1514:G1672_A119
1625A_C1516:G1670_A119
1630A_C1521:G1665_A119
1638A_C1534:A1657_A00
1640A_C1562:G2738_A10
1641A_C1564:G1557_A119
1642A_C1565:G1556_A119
1643A_C1566:G1555_A119
1678A_C1582:C1613_A00
1680A_C1584:G1611_A119
1681A_C1585:G1610_A119
1688A_C1593:G1601_A119
1689A_C1594:G1600_A119
1668A_C1620:G1576_A119
1671A_C1623:A1573_A60
1656A_C1643:G1542_A119
1657A_C1644:G1541_A119
1663A_C1650:G1535_A119
1664A_C1651:G1655_A119
1691A_C1686:G1695_A119
1692A_C1687:G1694_A119
1576A_C1705:G1713_A119
1556A_C1725:G2050_A119
1694A_C1734:G2045_A119
1695A_C1735:G2044_A119
1698A_C1738:G2041_A119
1710A_C1762:G1782_A119
1711A_C1763:G1781_A119
1712A_C1764:G1780_A119
1715A_C1768:A1775_A60
1716A_C1769:G1774_A119
1723A_C1803:G1789_A119
1728A_C1808:G1812_A119
1734A_C1824:G2025_A119
1736A_C1826:G2023_A119
1384A_C1830:G820_A119
1388A_C1834:C1841_A00
1763A_C1853:G1878_A119
1764A_C1854:G1877_A119
1766A_C1856:G1873_A222
1770A_C1861:G1868_A119
1771A_C1862:G1867_A119
1743A_C1888:G2014_A119
1744A_C1889:G2013_A119
1789A_C1913:G1926_A119
1790A_C1914:G1925_A119
1792A_C1916:G1923_A119
1777A_C1935:G1902_A119
1778A_C1936:G1901_A119
1783A_C1943:G1896_A119
1786A_C1946:G1891_A119
1795A_C1965:G1947_A119
1800A_C1983:A1981_A00
1803A_C1987:G2001_A119
1804A_C1988:G2000_A119
1806A_C1990:G1998_A119
1274A_C2061:G2075_A119
1281A_C2065:G2080_A119
1280A_C2066:G2079_A119
1266A_C2071:U625_A00
1828A_C2098:G2646_A119
1859A_C2239:G2136_A10
1861A_C2241:G2134_A119
1864A_C2245:G2256_A119
1866A_C2247:G2254_A119
1867A_C2248:G2253_A119
1830A_C2261:C2132_A10
1831A_C2262:G2131_A119
1837A_C2268:G2125_A119
1838A_C2269:G2124_A119
1841A_C2273:G2121_A119
1871A_C2281:G2289_A119
1872A_C2309:G2288_A119
1881A_C2313:G2295_A119
1883A_C2315:G2293_A119
1893A_C2325:G2375_A119
1897A_C2329:G2371_A119
1900A_C2331:G2355_A119
1903A_C2334:G2350_A119
1904A_C2335:G2349_A119
1889A_C2360:G2426_A119
1918A_C2403:G2385_A119
1920A_C2405:G2383_A119
1924A_C2409:G2418_A119
1926A_C2411:G2416_A119
1910A_C2423:G2363_A119
1885A_C2427:G2462_A00
1143A_C2450:G2442_A119
1147A_C2454:G2438_A119
1847A_C2472:G2113_A119
1849A_C2476:G2111_A119
1850A_C2477:G2110_A119
1934A_C2496:G2524_A119
1936A_C2498:G2522_A119
1938A_C2500:G2520_A119
1940A_C2502:C2518_A10
1855A_C2536:C2104_A00
1948A_C2542:G2617_A119
1953A_C2547:G2609_A119
1954A_C2548:G2606_A119
1955A_C2549:G2605_A119
1957A_C2551:G2603_A119
1958A_C2552:G2602_A119
1959A_C2555:G2580_A119
1960A_C2556:G2579_A119
1964A_C2559:G2574_A119
1965A_C2560:G2573_A119
1966A_C2561:G2572_A119
1807A_C2591:U1996_A00
1809A_C2593:G2585_A119
1810A_C2594:G2584_A119
1751A_C2625:G2639_A119
1752A_C2626:G2638_A119
1755A_C2629:G2634_A119
1815A_C2651:G2094_A119
1818A_C2654:G2090_A119
11010A_C2672:G2817_A119
11014A_C2676:G2809_A119
1974A_C2704:U2690_A60
1977A_C2707:G2687_A119
1987A_C2717:G2763_A119
1995A_C2728:G2754_A119
1996A_C2729:G2753_A119
11004A_C2737:G2742_A119
11018A_C2769:A2805_A00
11028A_C2780:G2794_A119
11033A_C2785:C2787_A50
11039A_C2831:G2909_A10
11040A_C2832:G2848_A119
11041A_C2833:G2847_A119
11043A_C2835:G2845_A119
11051A_C2857:G2900_A119
11053A_C2859:G2898_A119
11060A_C2868:U2889_A30
11062A_C2870:G2887_A119
11065A_C2873:G2884_A119
12A_G13:C530_A119
16A_G17:U526_A028
19A_G20:C523_A119
110A_G21:U522_A028
112A_G23:A520_A1011
113A_G24:A519_A1011
117A_G28:C480_A119
121A_G32:C451_A119
122A_G33:C450_A119
127A_G38:C444_A119
128A_G39:C443_A119
130A_G41:C440_A119
138A_G61:C85_A119
141A_G64:U55_A128
143A_G66:C53_A119
158A_G71:A106_A08
163A_G76:C101_A119
164A_G77:C100_A119
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11077B_A3044:U3039_B50
11078B_A3045:A3038_B50
11080B_A3047:U3033_B120
11084B_A3052:A3051_B00
11086B_A3054:U3028_B120
11092B_A3062:U3018_B120
11106B_A3077:A3104_B82
11108B_A3080:G3102_B911
11113B_A3085:U3097_B120
11073B_C3006:G3117_B119
11076B_C3009:G3114_B119
11081B_C3048:G3032_B119
11089B_C3059:G3021_B119
11090B_C3060:G3020_B119
11091B_C3061:G3019_B119
11093B_C3063:G3017_B119
11094B_C3064:G3016_B119
11096B_C3067:G3014_B119
11100B_C3071:G3110_B119
11101B_C3072:G3109_B119
11109B_C3081:G3101_B119
11116B_C3089:G3094_B119
11071B_G3004:C3119_B119
11072B_G3005:C3118_B119
11074B_G3007:C3116_B119
11075B_G3008:C3115_B119
11088B_G3022:C3026_B60
11070B_G3025:C3121_B60
11079B_G3043:C3037_B119
11082B_G3049:C3031_B119
11083B_G3050:C3030_B119
11085B_G3053:C3029_B119
11095B_G3066:C3015_B119
11097B_G3068:A3011_B120
11102B_G3073:C3108_B119
11103B_G3074:C3107_B119
11104B_G3075:C3106_B119
11105B_G3076:A3105_B1011
11111B_G3083:U3099_B128
11112B_G3084:C3098_B119
11114B_G3086:C3096_B119
11115B_G3088:C3095_B119
11117B_G3090:A3093_B00
11087B_U3055:C3027_B00
11098B_U3069:U3112_B116
11099B_U3070:U3111_B116
11107B_U3079:A3103_B424
11110B_U3082:G3100_B128

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)