A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 1Q8N  PDB ID: 1Q8N 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U36_A1.31-0.256-0.2925.095-21.1174.648
15A_C5:G34_A-0.831-0.1610.142-3.899-5.3175.279
16A_C6:G33_A-0.628-0.089-0.149-6.667-4.2442.266
17A_C7:G29_A1.11-0.6290.09112.1754.532-3.736
19A_C10:G23_A-0.604-0.024-0.002-1.903-3.889-3.931
113A_C14:G19_A-0.527-0.0690.002-0.178-4.0980.247
11A_G1:C38_A0.562-0.0950.2-1.093-3.2-0.631
12A_G2:C37_A-1.304-1.2470.7868.36-11.653-11.834
18A_G8:C28_A-0.522-0.131-0.166-4.41712.7710.687
111A_G12:C21_A-0.905-0.4030.1324.808-8.859-0.895
112A_G13:C20_A-0.29-0.1020.025-2.823-7.276-2.076
114A_G15:A18_A5.553-2.5761.4217.62116.909-12.431
14A_U4:A35_A-1.179-0.09-0.26-17.077-24.4-4.31
110A_U11:A22_A0.874-0.3560.182-5.819-7.755-2.222

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.