A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: UR0034  PDB ID: 1Q96 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18A_A9:A21_A-5.9775.077-0.065-19.225-0.624-178.356
110A_A12:G19_A-6.782-4.196-0.1171.895-6.352-0.901
125A_A15:G16_C-2.7055.283-0.3474.332-13.186135.711
15A_C6:G24_A0.391-0.138-0.0366.863-13.5941.32
17A_C8:C22_A7.075-5.5-0.376-10.996-16.371-5.444
11A_G2:C28_A-0.26-0.1480.074-5.214-8.0230.004
12A_G3:C27_A-0.291-0.177-0.211-9.369-13.982.514
14A_G5:C25_A-0.123-0.1580.1872.451-10.9531.365
112A_G14:A17_A6.955-5.030.2918.8626.511-13.012
13A_U4:A26_A0.074-0.1210.175-3.425-9.5573.844
16A_U7:C23_A5.769-2.353-0.642-10.662-16.608-13.578
19A_U11:A20_A4.12-1.869-0.4598.994-14.885-102.504
111A_U13:A18_A-0.018-0.046-0.0024.348-5.682.14
133B_A9:A21_B-6.0325.0250.156-13.2610.326-173.16
135B_A12:G19_B-6.907-4.262-0.1415.507-3.373-0.85
130B_C6:G24_B0.293-0.102-0.0756.054-12.1521.17
132B_C8:C22_B6.899-5.191-0.34-15.254-14.045-4.045
126B_G2:C28_B-0.311-0.1430.078-1.061-8.843-0.809
127B_G3:C27_B-0.421-0.1160.09-4.113-14.7980.997
129B_G5:C25_B-0.251-0.1380.1081.833-12.4021.263
137B_G14:A17_B7.049-5.1030.46712.7353.121-12.518
128B_U4:A26_B-0.116-0.0750.1021.314-13.7450.7
131B_U7:C23_B5.804-2.268-0.67-7.192-15.975-11.789
134B_U11:A20_B4.083-1.835-0.437.058-12.763-103.969
136B_U13:A18_B-0.014-0.119-0.3537.541-3.7964.438
120C_A9:A21_C-5.775.036-0.316-13.57-3.362-175.894
122C_A12:G19_C-6.688-4.416-0.275.759-11.24-2.081
117C_C6:G24_C0.35-0.0920.1713.643-13.2612.323
119C_C8:C22_C6.881-5.439-0.207-13.0-17.06-5.118
113C_G2:C28_C-0.408-0.1460.119-3.423-11.0071.195
114C_G3:C27_C-0.319-0.154-0.041-7.757-14.6130.209
116C_G5:C25_C-0.173-0.1490.2154.216-9.756-0.179
124C_G14:A17_C7.907-4.8620.5836.467-14.034-50.662
115C_U4:A26_C-0.005-0.0910.252-3.415-11.1392.32
118C_U7:C23_C5.741-2.272-0.892-15.372-16.815-11.238
121C_U11:A20_C4.051-1.632-0.2053.17-5.565-103.609
123C_U13:A18_C-0.121-0.116-0.1979.59-13.1554.793

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.