A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: PR0015  PDB ID: 1QA6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_A104:U155_C-0.1440.1240.1385.152.4963.25
113C_A107:U131_C0.291-0.3280.07911.797-34.694-1.713
112C_A136:U132_C0.3541.0520.06913.009-5.705177.528
18C_A140:U151_C-0.306-0.391-0.349-18.347-4.2153.538
12C_C102:G157_C0.102-0.3440.722-5.763-14.41.943
13C_C103:G156_C0.613-0.5770.263-6.594-9.15-1.563
119C_C114:G124_C0.4270.006-0.4470.352-17.4341.749
110C_C142:G149_C0.022-0.531-0.7084.6241.743-4.095
11C_G101:U158_C-2.666-0.888-0.644-16.605-23.075-4.332
15C_G105:C154_C-0.261-0.204-0.969-19.495-6.4290.213
16C_G106:A153_C6.565-4.3750.199-13.57-13.241-4.633
115C_G109:C129_C0.043-0.1280.354.19112.091-1.933
117C_G112:C126_C-0.314-0.3940.64719.894-5.235-7.306
118C_G113:C125_C-0.858-0.3090.1543.202-16.636-1.649
17C_G137:C152_C-1.303-0.6790.0-4.0091.126-10.854
19C_G141:C150_C-0.222-0.217-0.687-16.0220.870.476
111C_G143:A148_C6.154-3.932-0.949-4.29310.611-6.847
114C_U108:A130_C0.13-0.48-0.559-0.989-15.221-2.485
116C_U110:A138_C-0.5323.4390.375-5.0568.725-69.801
120C_U115:A123_C5.457-1.2920.411-14.891-9.127-1.723
124D_A104:U155_D-0.1440.1240.1385.1472.4753.245
133D_A107:U131_D0.291-0.3280.0811.809-34.692-1.7
132D_A136:U132_D0.3541.0520.06913.019-5.694177.529
128D_A140:U151_D-0.306-0.391-0.35-18.345-4.2233.54
122D_C102:G157_D0.103-0.3440.722-5.761-14.4181.942
123D_C103:G156_D0.614-0.5780.263-6.581-9.152-1.572
139D_C114:G124_D0.4270.006-0.4470.35-17.4371.748
130D_C142:G149_D0.022-0.531-0.7084.6321.744-4.105
121D_G101:U158_D-2.666-0.888-0.644-16.605-23.072-4.333
125D_G105:C154_D-0.261-0.205-0.969-19.499-6.440.21
126D_G106:A153_D6.566-4.3740.199-13.576-13.248-4.635
135D_G109:C129_D0.043-0.1270.354.21312.109-1.923
137D_G112:C126_D-0.314-0.3940.64619.89-5.239-7.301
138D_G113:C125_D-0.859-0.3090.1553.211-16.617-1.633
127D_G137:C152_D-1.303-0.6780.0-4.0121.142-10.862
129D_G141:C150_D-0.222-0.217-0.687-16.0170.8670.482
131D_G143:A148_D6.154-3.933-0.949-4.29710.622-6.847
134D_U108:A130_D0.13-0.48-0.558-0.993-15.215-2.49
136D_U110:A138_D-0.5323.4380.374-5.0478.706-69.801
140D_U115:A123_D5.457-1.2920.41-14.889-9.123-1.723

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.