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As of 5-Aug-2020 number of released structures: 10886
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NDB ID: AR0021  PDB ID: 1QC0 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_A12:U27_B-0.024-0.1030.097-2.929-15.7924.972
14A_C14:G25_B0.323-0.172-0.05-0.171-11.807-1.377
19A_C19:G20_B0.295-0.152-0.0885.578-7.5840.869
13A_G13:C26_B-0.969-0.3010.062-0.586-13.6511.628
15A_G15:C24_B-0.055-0.148-0.009-4.876-10.406-1.963
16A_G16:C23_B-0.272-0.1120.044-7.085-13.0920.616
18A_G18:C21_B-0.162-0.154-0.040.075-11.185-1.268
11A_U11:A28_B0.64-0.1410.111-3.097-13.692-0.357
17A_U17:A22_B-0.029-0.0970.163-1.281-12.4122.378
112C_A103:U136_D0.012-0.1740.0950.923-12.105-0.427
121C_A112:U127_D-0.408-0.1280.3733.261-11.34-1.36
111C_C102:G137_D0.214-0.1280.198-1.965-9.4161.114
113C_C104:G135_D-0.262-0.331-0.0854.065-17.1531.785
114C_C105:G134_D0.357-0.3170.0851.446-9.546-0.598
123C_C114:G125_D-0.205-0.215-0.1327.008-18.0420.293
128C_C119:G120_D-0.4190.0060.368-0.374-6.0291.698
110C_G101:C138_D-0.285-0.218-0.116-3.837-9.5832.638
115C_G106:C133_D-0.537-0.2020.1230.864-11.759-1.423
118C_G109:C130_D-0.746-0.1930.072-3.311-17.0433.186
119C_G110:C129_D0.7280.3910.187-7.245-16.9512.168
122C_G113:C126_D-0.95-0.1980.3284.056-13.1042.144
124C_G115:C124_D0.061-0.04-0.038-3.825-9.8020.802
125C_G116:C123_D0.189-0.1330.011-4.476-13.828-2.983
127C_G118:C121_D-0.231-0.2990.205-5.359-13.8543.005
116C_U107:A132_D0.739-0.2570.0092.548-18.1537.133
117C_U108:A131_D0.244-0.2520.284-2.727-6.4131.765
120C_U111:A128_D0.565-0.3890.278-7.826-7.0181.778
126C_U117:A122_D0.003-0.2160.231-4.257-11.8722.607

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.