1QES: Base Pair Morphology Step Parameters

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NDB ID: 1QES PDB ID: 1QES

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_A3G4:U13U14_BB	1.401	-2.157	2.884	-0.04	7.937	25.549	-6.282	-3.039	2.126	17.419	0.087	26.733
1	7	AA_C7C8:G9G10_BB	0.2	-1.803	2.753	2.816	3.103	27.168	-4.415	0.143	2.543	6.556	-5.951	27.483
1	1	AA_G1G2:C15C16_BB	-0.269	-1.756	2.733	-2.131	6.611	28.904	-4.507	0.176	2.298	13.008	4.193	29.709
1	2	AA_G2A3:U14C15_BB	-0.01	-1.853	2.848	0.802	5.392	29.896	-4.424	0.15	2.482	10.343	-1.538	30.378
1	4	AA_G4U5:G12U13_BB	-0.057	-1.03	3.115	0.399	7.412	50.182	-1.69	0.093	2.945	8.684	-0.468	50.692
1	5	AA_U5U6:A11G12_BB	-1.252	-2.049	2.785	0.515	10.781	23.94	-6.603	2.86	1.692	24.461	-1.169	26.228
1	6	AA_U6C7:G10A11_BB	-0.041	-1.833	2.92	0.003	6.141	30.411	-4.42	0.076	2.51	11.559	-0.005	31.011

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.