1QFQ: Base Pair Morphology Step Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 1QFQ PDB ID: 1QFQ

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	AA_C2C3:G13G14_AA	1.133	-1.596	3.55	0.717	-2.434	23.222	-3.017	-2.526	3.728	-6.024	-1.774	23.358
1	3	AA_C3C4:G12G13_AA	0.159	-1.681	3.064	-0.591	8.365	37.793	-3.445	-0.304	2.644	12.723	0.899	38.679
1	4	AA_C4U5:A11G12_AA	-0.866	-2.046	2.763	-0.858	9.273	18.32	-8.626	2.162	1.588	26.98	2.495	20.533
1	1	AA_G1C2:G14C15_AA	-0.029	-1.998	3.329	4.224	14.343	32.537	-5.117	0.595	2.257	24.077	-7.091	35.723
1	5	AA_U5G6:A10A11_AA	-1.865	-1.696	2.617	-8.413	8.786	62.248	-1.928	1.478	2.589	8.413	8.056	63.308

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.