1QN5: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: PD0155 PDB ID: 1QN5

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_DA204:DT225_D	-0.159	-0.068	-0.024	-38.81	13.884	6.165
1	6	C_DA206:DT223_D	0.107	-0.136	-0.284	-3.734	-2.025	4.783
1	7	C_DA207:DT222_D	0.116	-0.146	-0.095	12.79	-2.261	5.529
1	9	C_DA209:DT220_D	0.076	0.059	0.403	42.492	-4.196	7.842
1	14	C_DA214:DT215_D	0.805	-0.114	0.244	23.777	-15.886	4.685
1	2	C_DC202:DG227_D	0.493	-0.392	0.565	-14.996	-11.203	-5.077
1	13	C_DC213:DG216_D	0.74	-0.435	-0.152	7.694	-0.223	-4.093
1	1	C_DG201:DC228_D	-0.58	-0.406	-0.028	-3.276	-5.235	-3.482
1	8	C_DG208:DC221_D	-0.313	-0.002	0.438	32.949	2.205	2.945
1	10	C_DG210:DC219_D	0.782	-3.579	-0.555	5.001	7.845	72.562
1	11	C_DG211:DC218_D	-0.209	-0.257	-0.188	-5.842	-8.773	-2.519
1	12	C_DG212:DC217_D	-0.572	-0.308	-0.186	-8.356	-3.358	-2.838
1	3	C_DT203:DA226_D	0.099	-0.24	-0.085	-2.256	-1.183	7.845
1	5	C_DT205:DA224_D	0.006	-0.144	0.064	-27.181	-8.057	3.573
1	18	E_DA204:DT225_F	-0.154	-0.038	0.036	-35.997	15.21	6.568
1	20	E_DA206:DT223_F	0.05	-0.173	-0.443	-4.545	-0.642	4.61
1	21	E_DA207:DT222_F	0.032	-0.172	-0.14	14.253	-0.93	5.73
1	23	E_DA209:DT220_F	0.061	0.051	0.338	39.266	-4.912	8.335
1	28	E_DA214:DT215_F	0.699	-0.099	0.291	18.621	-6.884	1.199
1	16	E_DC202:DG227_F	0.237	-0.316	0.553	-16.573	-9.17	-4.946
1	27	E_DC213:DG216_F	0.646	-0.406	-0.271	7.038	3.917	-3.903
1	15	E_DG201:DC228_F	-0.177	-0.368	0.017	-17.078	-12.22	-9.805
1	22	E_DG208:DC221_F	-0.218	0.019	0.601	35.048	2.816	0.493
1	24	E_DG210:DC219_F	0.702	-3.502	-0.451	3.671	9.002	73.343
1	25	E_DG211:DC218_F	-0.28	-0.26	0.132	4.709	-11.051	-1.435
1	26	E_DG212:DC217_F	-0.123	-0.262	-0.043	-6.047	-6.934	-3.773
1	17	E_DT203:DA226_F	-0.104	-0.268	0.128	-11.833	-3.674	7.141
1	19	E_DT205:DA224_F	-0.066	-0.07	0.027	-26.048	-6.902	4.901

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.