1QN5: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: PD0155 PDB ID: 1QN5

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	CC_DA204DT205:DA224DT225_DD	-1.166	-0.369	3.416	1.137	19.351	21.124	-5.146	2.619	2.242	42.903	-2.52	28.596
1	6	CC_DA206DA207:DT222DT223_DD	0.265	1.229	3.225	-1.202	23.424	12.972	-4.759	-0.952	2.634	61.366	3.148	26.759
1	7	CC_DA207DG208:DC221DT222_DD	0.288	0.774	3.08	-0.908	11.727	19.457	-2.305	-1.061	3.029	31.271	2.422	22.707
1	9	CC_DA209DG210:DC219DT220_DD	-1.805	5.349	-0.264	132.65	-14.941	-139.169	-2.698	-0.89	0.524	7.618	67.635	-164.167
1	2	CC_DC202DT203:DA226DG227_DD	0.728	-0.411	2.948	8.058	2.518	36.318	-0.952	-0.155	3.002	3.974	-12.716	37.254
1	13	CC_DC213DA214:DT215DG216_DD	-0.35	0.437	3.047	0.118	5.724	28.553	-0.313	0.722	3.072	11.46	-0.236	29.11
1	1	CC_DG201DC202:DG227DC228_DD	-0.66	-1.296	3.792	-3.618	-7.894	40.474	-0.814	0.467	4.007	-11.255	5.159	41.357
1	8	CC_DG208DA209:DT220DC221_DD	0.211	0.642	3.457	4.073	21.736	22.368	-3.532	0.495	2.948	44.44	-8.327	31.355
1	10	CC_DG210DG211:DC218DC219_DD	-0.501	4.602	-1.268	-135.709	111.388	-130.695	-2.038	0.07	-2.531	-55.822	-68.01	-178.152
1	11	CC_DG211DG212:DC217DC218_DD	0.273	-0.14	3.335	1.157	3.976	30.508	-1.056	-0.284	3.299	7.513	-2.187	30.781
1	12	CC_DG212DC213:DG216DC217_DD	-0.105	0.101	3.031	-1.177	3.261	36.364	-0.257	0.016	3.03	5.21	1.881	36.523
1	3	CC_DT203DA204:DT225DA226_DD	0.149	-0.502	4.703	-4.634	49.141	16.024	-5.261	-0.613	1.015	72.803	6.866	51.739
1	5	CC_DT205DA206:DT223DA224_DD	-0.118	1.985	3.083	0.474	9.239	24.073	1.723	0.405	3.582	21.178	-1.086	25.765
1	17	EE_DA204DT205:DA224DT225_FF	-1.086	-0.412	3.47	2.212	17.823	22.197	-4.957	2.72	2.378	39.084	-4.851	28.481
1	19	EE_DA206DA207:DT222DT223_FF	0.225	1.242	3.117	-2.857	22.299	13.325	-4.408	-1.415	2.635	59.24	7.59	26.09
1	20	EE_DA207DG208:DC221DT222_FF	0.129	0.775	3.072	-1.561	11.793	20.926	-1.946	-0.813	3.046	29.585	3.917	24.038
1	22	EE_DA209DG210:DC219DT220_FF	-1.651	5.245	-0.497	133.898	-16.317	-135.389	-2.653	-0.849	0.34	8.344	68.473	-163.258
1	15	EE_DC202DT203:DA226DG227_FF	1.14	-0.1	3.198	5.046	1.939	37.782	-0.398	-1.107	3.309	2.976	-7.743	38.153
1	26	EE_DC213DA214:DT215DG216_FF	-0.603	0.237	3.111	-2.229	5.706	25.654	-0.956	0.747	3.129	12.623	4.931	26.363
1	14	EE_DG201DC202:DG227DC228_FF	-0.156	-0.603	3.407	-3.086	-3.509	34.603	-0.446	-0.232	3.45	-5.867	5.159	34.907
1	21	EE_DG208DA209:DT220DC221_FF	0.376	0.665	3.692	5.121	21.786	21.803	-3.905	0.509	3.121	45.06	-10.591	31.147
1	23	EE_DG210DG211:DC218DC219_FF	-0.422	-3.32	-2.955	134.181	-110.459	146.357	-1.908	-0.089	-2.313	-55.314	-67.193	178.206
1	24	EE_DG211DG212:DC217DC218_FF	0.078	-0.63	3.614	1.083	1.352	33.759	-1.325	0.059	3.587	2.325	-1.864	33.803
1	25	EE_DG212DC213:DG216DC217_FF	-0.212	-0.053	3.056	2.375	1.886	33.814	-0.373	0.718	3.027	3.234	-4.074	33.946
1	16	EE_DT203DA204:DT225DA226_FF	0.299	-0.72	4.464	-3.752	48.12	17.044	-5.125	-0.681	0.84	71.48	5.574	51.017
1	18	EE_DT205DA206:DT223DA224_FF	-0.129	1.991	3.12	1.282	10.959	23.662	1.154	0.667	3.654	25.053	-2.932	26.075

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.